Click here to switch to the map view.

The map label for this gene is 117918714

Identifier: 117918714

GI number: 117918714

Start: 288404

End: 288817

Strand: Direct

Name: 117918714

Synonym: Shewana3_0257

Alternate gene names: NA

Gene position: 288404-288817 (Clockwise)

Preceding gene: 117918713

Following gene: 117918721

Centisome position: 5.8

GC content: 43.72

Gene sequence:

>414_bases
ATGAAAAAACTATCTTTAGTTGCGGTATCTTTATTATCTGCATTAGTGGCCGGCCAAGCTTCAGCGGCAGCCGATACTAC
AGGTTTTTATGTGGGTGGCGCACTAAACCGCGTAGCTGTGGATGTTGTTGATGATTCAGATACTGGCACAGGTTTCGGTG
TTTACGGTGGTTACAACTTCAACGAGTGGTTTGGTTTAGAAGCCAATTTATTTGCGACGGCCGATTTGGGCGACAGAGAT
ACGGATGTCACCGCGGGCGCATTAACCTTCACGCCTAAGTTTACTTTGCAAATCAATGATATGTTCTCAGCTTATGCAAA
AGTTGGTGTTGCATCTATGGCTATGAATTTTGACGGTTTTGGTTTCGATGAAGATTTCACTTGGTTTTGGTTGGACATAT
GGCGTAGGTATTAA

Upstream 100 bases:

>100_bases
TATAAAACGTATTTATTTTTTACAAAATGTCACTCTTATTATTTGTTTGTTGTAATATCCGCCGCGTTTACTACTCAAGT
TAACTCATTAGGAAAATATA

Downstream 100 bases:

>100_bases
TGCTGCCGTGACCGAACGTTTAAATGTGCGCTTTAGCTACGATGTCACCACAGGTGATTTAGATGCTGACCACAGCTATT
TGAATATGAAAGATATCGAC

Product: outer membrane protein

Products: NA

Alternate protein names: OmpA Domain-Containing Protein; OmpA Domain Protein Transmembrane Region-Containing Protein; OmpA-Like Transmembrane Region

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MKKLSLVAVSLLSALVAGQASAAADTTGFYVGGALNRVAVDVVDDSDTGTGFGVYGGYNFNEWFGLEANLFATADLGDRD
TDVTAGALTFTPKFTLQINDMFSAYAKVGVASMAMNFDGFGFDEDFTWFWLDIWRRY

Sequences:

>Translated_137_residues
MKKLSLVAVSLLSALVAGQASAAADTTGFYVGGALNRVAVDVVDDSDTGTGFGVYGGYNFNEWFGLEANLFATADLGDRD
TDVTAGALTFTPKFTLQINDMFSAYAKVGVASMAMNFDGFGFDEDFTWFWLDIWRRY
>Mature_137_residues
MKKLSLVAVSLLSALVAGQASAAADTTGFYVGGALNRVAVDVVDDSDTGTGFGVYGGYNFNEWFGLEANLFATADLGDRD
TDVTAGALTFTPKFTLQINDMFSAYAKVGVASMAMNFDGFGFDEDFTWFWLDIWRRY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14822; Mature: 14822

Theoretical pI: Translated: 3.92; Mature: 3.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLSLVAVSLLSALVAGQASAAADTTGFYVGGALNRVAVDVVDDSDTGTGFGVYGGYNF
CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCEEECCCCCC
NEWFGLEANLFATADLGDRDTDVTAGALTFTPKFTLQINDMFSAYAKVGVASMAMNFDGF
CCEECCCCCEEEEECCCCCCCCCCCCEEEECCEEEEEEHHHHHHHHHHHHHHEEECCCCC
GFDEDFTWFWLDIWRRY
CCCCCCHHHEEEHHHCC
>Mature Secondary Structure
MKKLSLVAVSLLSALVAGQASAAADTTGFYVGGALNRVAVDVVDDSDTGTGFGVYGGYNF
CCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCEEECCCCCC
NEWFGLEANLFATADLGDRDTDVTAGALTFTPKFTLQINDMFSAYAKVGVASMAMNFDGF
CCEECCCCCEEEEECCCCCCCCCCCCEEEECCEEEEEEHHHHHHHHHHHHHHEEECCCCC
GFDEDFTWFWLDIWRRY
CCCCCCHHHEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA