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The map label for this gene is yhbQ [C]

Identifier: 117918594

GI number: 117918594

Start: 155558

End: 155980

Strand: Direct

Name: yhbQ [C]

Synonym: Shewana3_0136

Alternate gene names: 117918594

Gene position: 155558-155980 (Clockwise)

Preceding gene: 117918593

Following gene: 117918595

Centisome position: 3.13

GC content: 49.65

Gene sequence:

>423_bases
GTGATTGAAGCTGCTAATTCAACTCCCTCGGCTAGCCCCAAAAAAGGGGCTAGCCAAACTCAAGCTGCTAACCAAGCTCA
GCTGTCGAGCAAGCCAGAAGCGCTAGGTGCTGAGCAAGCTGTTACTTCGGAGCAAGGCGCAACATCAGAGATAGAACAAG
TCTCGATGTGGTATCTGTATCTTATCCGCTGCGCCAATGGTCACTTATACACAGGCATCACCACAGATGTCGCACGCCGC
TTTAACGAACATCAATCAAGCAGTCCCAAAGCTGCAAAGTACCTGCGCGGCAAAGGGCCATTAACCCTAATGTATCAAGA
ACCAGTCGGCACTCGCAGCGATGCGCTAAGGCGTGAAATCGCAGTTAAAAAGTTAAGCCGCAATCAAAAGCTGGCGTTGA
TTGAATCTGCTGAACATAGATAG

Upstream 100 bases:

>100_bases
AGTGGCCGTTACCGCCAGTATCAAGACACAGCGCAGGAATATGCCTTCTTCTTAAGCCTGCTCGGCATGACTAAGTAGGC
GCCAACGGGTGACCGATTTA

Downstream 100 bases:

>100_bases
TGCGAGATAAAAGAGCTAAATCATTGGTGTATACGTGTAATGATTAAGCACTGCCATTCCAGTGACACGCCGCCCTTTCA
TTTAACAAGAAGTATCCCTA

Product: excinuclease ABC subunit C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MIEAANSTPSASPKKGASQTQAANQAQLSSKPEALGAEQAVTSEQGATSEIEQVSMWYLYLIRCANGHLYTGITTDVARR
FNEHQSSSPKAAKYLRGKGPLTLMYQEPVGTRSDALRREIAVKKLSRNQKLALIESAEHR

Sequences:

>Translated_140_residues
MIEAANSTPSASPKKGASQTQAANQAQLSSKPEALGAEQAVTSEQGATSEIEQVSMWYLYLIRCANGHLYTGITTDVARR
FNEHQSSSPKAAKYLRGKGPLTLMYQEPVGTRSDALRREIAVKKLSRNQKLALIESAEHR
>Mature_140_residues
MIEAANSTPSASPKKGASQTQAANQAQLSSKPEALGAEQAVTSEQGATSEIEQVSMWYLYLIRCANGHLYTGITTDVARR
FNEHQSSSPKAAKYLRGKGPLTLMYQEPVGTRSDALRREIAVKKLSRNQKLALIESAEHR

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0213 family [H]

Homologues:

Organism=Escherichia coli, GI1789545, Length=78, Percent_Identity=60.2564102564103, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022992
- InterPro:   IPR000305 [H]

Pfam domain/function: PF01541 GIY-YIG [H]

EC number: NA

Molecular weight: Translated: 15275; Mature: 15275

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEAANSTPSASPKKGASQTQAANQAQLSSKPEALGAEQAVTSEQGATSEIEQVSMWYLY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
LIRCANGHLYTGITTDVARRFNEHQSSSPKAAKYLRGKGPLTLMYQEPVGTRSDALRREI
HHHHCCCCEEECHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
AVKKLSRNQKLALIESAEHR
HHHHHCCCCEEEEECCCCCC
>Mature Secondary Structure
MIEAANSTPSASPKKGASQTQAANQAQLSSKPEALGAEQAVTSEQGATSEIEQVSMWYLY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
LIRCANGHLYTGITTDVARRFNEHQSSSPKAAKYLRGKGPLTLMYQEPVGTRSDALRREI
HHHHCCCCEEECHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
AVKKLSRNQKLALIESAEHR
HHHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA