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The map label for this gene is xerD [H]

Identifier: 117676255

GI number: 117676255

Start: 203946

End: 204968

Strand: Reverse

Name: xerD [H]

Synonym: Shewana3_4316

Alternate gene names: 117676255

Gene position: 204968-203946 (Counterclockwise)

Preceding gene: 117676257

Following gene: 117676254

Centisome position: 73.48

GC content: 51.61

Gene sequence:

>1023_bases
ATGAACAACAAACCGCCAATACAGGCTAGCAACTTGTCGTTACGTAATAAGGATGCGACCCTGGTTGAACGCCAGGGGCC
CGAACCACTACGGCAATACCTCCAGGCAGCGACATCCGACAACACACGTAAAGCCTACCGTTCGGCCATTCGACAATTTG
AAAAATGGGGTGGTCGCCTGCCCTCGGATCGGGATACTGTCGTGCGTTACCTGCTGGCCAGAGCCGAATCGCTTAATCCC
CGAACCCTGGATCTGCACCTGACCGCTATTAGCCAATGGCACCATTATCAAGGGCTCATCGATCCAGTAAGTGATCCGTT
GGTCCGCAAAACCATGGAAGGCGTTCGTCGTACCTATGGCCAACCCAAGCGCAAAGCCAAGGCATTGCGCTTGGAGCACG
TCGCCCAAATGGTGAATCATTTGCGGCAACTACCAACCACCAAAAAGAAACTGAGGGATATCGCGCTGGTGTTGACCGGC
TTTTTCGGTGCCTTTCGCCGTAGCGAATTGGTGGCCATTCGCTACGGTGATCTGGTGTGGGAACCTGAAGGACTTCTCAT
CCGGCTGTCTAGTTCCAAGAACGATCAACAAGCCTCCGGCTTAGTGCGAGCATTACCTTTCGGTGCACCAGACTGCTGTC
CTGCTACGGCCATGAAAAACTGGATAGAACTGGGTGGCATTAATGAAGGTCCGGTTTTTCGCCCCATTAACCGGTGGGAT
AAGATTCAGCCTAAAGCGTTGAATCCCAGTGCCATTAATGAATTACTCAAGACTTTGGGTAACGCCTGCCAGTTCGATTT
TGTACCGGAATTGAGCAGCCATAGCTTCCGGCGCGGCCTCTCTACATCGGCAGCCCGAGAACGAGTTGATTTTGAGTTGA
TTAAAAAGCAAGGCGGATGGAAGAGCGATGCCACCGTCAGGGAGTACATTGAAGAAGGACAGCAGCTCTCCAATAACGCT
ACCCATATATTGATGGAGAAAATGGCGGTTCTTATAGATACCGTTCGGGTAAAAGAGATATGA

Upstream 100 bases:

>100_bases
AATCATCCTTATCGTGGGCTAGTTGATCTTGACGTAAATTTTCGACTTGTAACGCCGGTATATAGCCGCCTTTTGAGCGA
CATCGAAGGAAATCCTATTC

Downstream 100 bases:

>100_bases
ACATGACAAGAACTATCAGTAAAGTTGCCAAAGAACTGGCTATCAATATAGAAACCGTTCGCTTCTATGAGCGTCGTGGA
TTAATAGAGCAACCGCCAAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MNNKPPIQASNLSLRNKDATLVERQGPEPLRQYLQAATSDNTRKAYRSAIRQFEKWGGRLPSDRDTVVRYLLARAESLNP
RTLDLHLTAISQWHHYQGLIDPVSDPLVRKTMEGVRRTYGQPKRKAKALRLEHVAQMVNHLRQLPTTKKKLRDIALVLTG
FFGAFRRSELVAIRYGDLVWEPEGLLIRLSSSKNDQQASGLVRALPFGAPDCCPATAMKNWIELGGINEGPVFRPINRWD
KIQPKALNPSAINELLKTLGNACQFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGWKSDATVREYIEEGQQLSNNA
THILMEKMAVLIDTVRVKEI

Sequences:

>Translated_340_residues
MNNKPPIQASNLSLRNKDATLVERQGPEPLRQYLQAATSDNTRKAYRSAIRQFEKWGGRLPSDRDTVVRYLLARAESLNP
RTLDLHLTAISQWHHYQGLIDPVSDPLVRKTMEGVRRTYGQPKRKAKALRLEHVAQMVNHLRQLPTTKKKLRDIALVLTG
FFGAFRRSELVAIRYGDLVWEPEGLLIRLSSSKNDQQASGLVRALPFGAPDCCPATAMKNWIELGGINEGPVFRPINRWD
KIQPKALNPSAINELLKTLGNACQFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGWKSDATVREYIEEGQQLSNNA
THILMEKMAVLIDTVRVKEI
>Mature_340_residues
MNNKPPIQASNLSLRNKDATLVERQGPEPLRQYLQAATSDNTRKAYRSAIRQFEKWGGRLPSDRDTVVRYLLARAESLNP
RTLDLHLTAISQWHHYQGLIDPVSDPLVRKTMEGVRRTYGQPKRKAKALRLEHVAQMVNHLRQLPTTKKKLRDIALVLTG
FFGAFRRSELVAIRYGDLVWEPEGLLIRLSSSKNDQQASGLVRALPFGAPDCCPATAMKNWIELGGINEGPVFRPINRWD
KIQPKALNPSAINELLKTLGNACQFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGWKSDATVREYIEEGQQLSNNA
THILMEKMAVLIDTVRVKEI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38512; Mature: 38512

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKPPIQASNLSLRNKDATLVERQGPEPLRQYLQAATSDNTRKAYRSAIRQFEKWGGRL
CCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
PSDRDTVVRYLLARAESLNPRTLDLHLTAISQWHHYQGLIDPVSDPLVRKTMEGVRRTYG
CCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
QPKRKAKALRLEHVAQMVNHLRQLPTTKKKLRDIALVLTGFFGAFRRSELVAIRYGDLVW
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEE
EPEGLLIRLSSSKNDQQASGLVRALPFGAPDCCPATAMKNWIELGGINEGPVFRPINRWD
CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHC
KIQPKALNPSAINELLKTLGNACQFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGW
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
KSDATVREYIEEGQQLSNNATHILMEKMAVLIDTVRVKEI
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNKPPIQASNLSLRNKDATLVERQGPEPLRQYLQAATSDNTRKAYRSAIRQFEKWGGRL
CCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
PSDRDTVVRYLLARAESLNPRTLDLHLTAISQWHHYQGLIDPVSDPLVRKTMEGVRRTYG
CCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
QPKRKAKALRLEHVAQMVNHLRQLPTTKKKLRDIALVLTGFFGAFRRSELVAIRYGDLVW
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEE
EPEGLLIRLSSSKNDQQASGLVRALPFGAPDCCPATAMKNWIELGGINEGPVFRPINRWD
CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHC
KIQPKALNPSAINELLKTLGNACQFDFVPELSSHSFRRGLSTSAARERVDFELIKKQGGW
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
KSDATVREYIEEGQQLSNNATHILMEKMAVLIDTVRVKEI
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]