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The map label for this gene is yddU [C]

Identifier: 117676249

GI number: 117676249

Start: 199857

End: 200657

Strand: Reverse

Name: yddU [C]

Synonym: Shewana3_4310

Alternate gene names: 117676249

Gene position: 200657-199857 (Counterclockwise)

Preceding gene: 117676250

Following gene: 117676248

Centisome position: 71.94

GC content: 53.68

Gene sequence:

>801_bases
ATGGGAACGGCACCCGCCACGCATTCACTGACAGCCCCAACGGTCAATGCGTTGGCGGATGGATTGAACAAGGGTGAATT
CGTTCCTTTTTACCAGCCTCTATGGGATGTTCAACACCAATGCTGGGAAGGCGCTGAAACGCTCATTCGCTGGCAACATC
CAACTGAAGGATTGATCCAGTCAGACACCTTTATTCCCGTTGCCGAACAAAGCGGATTAATTCTGGAACTGGGCGCGTTT
GTCTTACGGGCGGTCTGTCAACAGATGATGCATTGGCGTCAACGCGGTTTACCCGAGGGTATCATCGCGGTCAACGTCTC
TGCCTTACAAATCCACCAACCTGACTTTGTCGAAGACCTTGCCAGGATATTGCGTGATACGGGACTGCCTGCTCCGGCAT
TGGAACTGGAATTAACCGAAACACTGGCCCTGGAGGATACGCCAATCCTGATCGAAAACCTGCATCGCTGCCAGGCGCTG
GGCATTCGCCTGTCCATCGACGATTTTGGTACCGGGAGTTCGTCGCTGGCACGCTTGCAATGCTGCCCAGTGACCCGCCT
AAAAATCGACAAAACCTTTGTCACGCATATGACAACCGAGCCAAAGGATCGCGCCATTACCGAAAGCGTCATCACCCTTG
GCCATAACCTGAATTTATCCATCGTCGCGGAAGGGGTTGAGACGGCCACTCAACAACAACTTTTAGAGAAGCTTGGCTGT
GATGTATTACAGGGCTATCGGCTGGCGCGGCCAGCCGATGCCGAAACGACTGAAGCGTTGTGGCCAGGCCGCAGTGTTTG
A

Upstream 100 bases:

>100_bases
TCCCTTACCTCACCATGGTGGAAGGTTTGAAGCTCTGCGCGCAAACCTTTAACAAGGATGTCAAAGAACTGTCCTGTTGT
GCAGGATAAGAGAGGGCAGT

Downstream 100 bases:

>100_bases
AACGAACGGAGACAAACCCATGTCAAAAGCCGCCGTGTCAAAAGATGTGTCACGATACTTTGAGGTGATCCCCGACTTTG
CGGCATTCATGGATGCCGAT

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MGTAPATHSLTAPTVNALADGLNKGEFVPFYQPLWDVQHQCWEGAETLIRWQHPTEGLIQSDTFIPVAEQSGLILELGAF
VLRAVCQQMMHWRQRGLPEGIIAVNVSALQIHQPDFVEDLARILRDTGLPAPALELELTETLALEDTPILIENLHRCQAL
GIRLSIDDFGTGSSSLARLQCCPVTRLKIDKTFVTHMTTEPKDRAITESVITLGHNLNLSIVAEGVETATQQQLLEKLGC
DVLQGYRLARPADAETTEALWPGRSV

Sequences:

>Translated_266_residues
MGTAPATHSLTAPTVNALADGLNKGEFVPFYQPLWDVQHQCWEGAETLIRWQHPTEGLIQSDTFIPVAEQSGLILELGAF
VLRAVCQQMMHWRQRGLPEGIIAVNVSALQIHQPDFVEDLARILRDTGLPAPALELELTETLALEDTPILIENLHRCQAL
GIRLSIDDFGTGSSSLARLQCCPVTRLKIDKTFVTHMTTEPKDRAITESVITLGHNLNLSIVAEGVETATQQQLLEKLGC
DVLQGYRLARPADAETTEALWPGRSV
>Mature_265_residues
GTAPATHSLTAPTVNALADGLNKGEFVPFYQPLWDVQHQCWEGAETLIRWQHPTEGLIQSDTFIPVAEQSGLILELGAFV
LRAVCQQMMHWRQRGLPEGIIAVNVSALQIHQPDFVEDLARILRDTGLPAPALELELTETLALEDTPILIENLHRCQALG
IRLSIDDFGTGSSSLARLQCCPVTRLKIDKTFVTHMTTEPKDRAITESVITLGHNLNLSIVAEGVETATQQQLLEKLGCD
VLQGYRLARPADAETTEALWPGRSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=239, Percent_Identity=35.5648535564854, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787541, Length=251, Percent_Identity=33.4661354581673, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=36.4406779661017, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=36.2068965517241, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1786507, Length=258, Percent_Identity=34.1085271317829, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI226510982, Length=244, Percent_Identity=34.0163934426229, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1788502, Length=236, Percent_Identity=33.8983050847458, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787055, Length=229, Percent_Identity=32.7510917030568, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=30.9322033898305, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788849, Length=237, Percent_Identity=30.379746835443, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=238, Percent_Identity=29.8319327731092, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=30.4721030042918, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000253
- InterPro:   IPR000014
- InterPro:   IPR008984 [H]

Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 29259; Mature: 29128

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTAPATHSLTAPTVNALADGLNKGEFVPFYQPLWDVQHQCWEGAETLIRWQHPTEGLIQ
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHEECCCCCCCCCC
SDTFIPVAEQSGLILELGAFVLRAVCQQMMHWRQRGLPEGIIAVNVSALQIHQPDFVEDL
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHH
ARILRDTGLPAPALELELTETLALEDTPILIENLHRCQALGIRLSIDDFGTGSSSLARLQ
HHHHHHCCCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCHHHEEE
CCPVTRLKIDKTFVTHMTTEPKDRAITESVITLGHNLNLSIVAEGVETATQQQLLEKLGC
ECCCCCEEECHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCH
DVLQGYRLARPADAETTEALWPGRSV
HHHHCCCCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure 
GTAPATHSLTAPTVNALADGLNKGEFVPFYQPLWDVQHQCWEGAETLIRWQHPTEGLIQ
CCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHEECCCCCCCCCC
SDTFIPVAEQSGLILELGAFVLRAVCQQMMHWRQRGLPEGIIAVNVSALQIHQPDFVEDL
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHH
ARILRDTGLPAPALELELTETLALEDTPILIENLHRCQALGIRLSIDDFGTGSSSLARLQ
HHHHHHCCCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCCHHHEEE
CCPVTRLKIDKTFVTHMTTEPKDRAITESVITLGHNLNLSIVAEGVETATQQQLLEKLGC
ECCCCCEEECHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCH
DVLQGYRLARPADAETTEALWPGRSV
HHHHCCCCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]