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The map label for this gene is yebA [H]

Identifier: 117676242

GI number: 117676242

Start: 190125

End: 190862

Strand: Reverse

Name: yebA [H]

Synonym: Shewana3_4303

Alternate gene names: 117676242

Gene position: 190862-190125 (Counterclockwise)

Preceding gene: 117676243

Following gene: 117676235

Centisome position: 68.42

GC content: 47.02

Gene sequence:

>738_bases
ATGTATTCTACCGATGTCGTAAAAGAAAATGCCTACCTTTCAGCCACCCGCTCGGGGCTGGAATCGAACGAGATCGCTAC
TCTTCAGCGCTCCTTGCCTTCCCGGTTTAATCTGCGGCATTTGAAAAAAAATGAATCATTAAAACTCGTACTGCAAAAGA
AAGCGGGAAAATCACATGTCGTGGCCTATAAATTTACGTCCGGTTCATTTAATTACACGGCGTATCGTATATCAGATAAA
AAGTTCTATAACCTTTCCGATACTTCCGGGAAAGGCAGTCTCGATTATCCGTTACCGGCCACAGCAAGACTCAGTTCGCC
TTTCAATCCTGCAAGACTTAACCCGGTATCGGGAAAAGTGAGTCCCCATAATGGCATTGATTATTCCATGCCCATGAACA
CGAAAATAGTCAGCGTCATCGACGGAAAAATCACCCGGGCCGAATACAACAGTACCATGGGATATTTTGTTGAAGTAACG
GGAAAAGCCGGTGTTAAAACTCGCTATCTCCACCTCAATAAAATACTCGTTACTAAAGGGGCCAGGGTTACACGGGGAGG
TGCTATTGCGTTATCCGGTAACAGCGGACGTTCATCCGGTCCTCATCTGCATTACGAGCTGGTCATCAATAACAACCCTG
TTAACTCTCTGGCGTTCCGGGCAGCGGCACCCGCTGATAACAAACTCGAACAGCATGCCTTTGCGCATGCCAGAGACTAC
GAACGATACCTGGACTGA

Upstream 100 bases:

>100_bases
ACGACCATCAACGGTGCTCCCGATTAACTGACAGATGACACGCCTCCTGAAAACCCCTAGCATACGCCGCAGTGTTCATG
CTAACGGCGAATTCCAGTAA

Downstream 100 bases:

>100_bases
TAACGGGACCGCGACGCGGCCCCGTCTGCCGGATTAATTTTTTTTATCGTTTTCACTTCCGTGATGTTGATGATCTCCAT
GCCCTCCGTGGCCGTGGAAA

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MYSTDVVKENAYLSATRSGLESNEIATLQRSLPSRFNLRHLKKNESLKLVLQKKAGKSHVVAYKFTSGSFNYTAYRISDK
KFYNLSDTSGKGSLDYPLPATARLSSPFNPARLNPVSGKVSPHNGIDYSMPMNTKIVSVIDGKITRAEYNSTMGYFVEVT
GKAGVKTRYLHLNKILVTKGARVTRGGAIALSGNSGRSSGPHLHYELVINNNPVNSLAFRAAAPADNKLEQHAFAHARDY
ERYLD

Sequences:

>Translated_245_residues
MYSTDVVKENAYLSATRSGLESNEIATLQRSLPSRFNLRHLKKNESLKLVLQKKAGKSHVVAYKFTSGSFNYTAYRISDK
KFYNLSDTSGKGSLDYPLPATARLSSPFNPARLNPVSGKVSPHNGIDYSMPMNTKIVSVIDGKITRAEYNSTMGYFVEVT
GKAGVKTRYLHLNKILVTKGARVTRGGAIALSGNSGRSSGPHLHYELVINNNPVNSLAFRAAAPADNKLEQHAFAHARDY
ERYLD
>Mature_245_residues
MYSTDVVKENAYLSATRSGLESNEIATLQRSLPSRFNLRHLKKNESLKLVLQKKAGKSHVVAYKFTSGSFNYTAYRISDK
KFYNLSDTSGKGSLDYPLPATARLSSPFNPARLNPVSGKVSPHNGIDYSMPMNTKIVSVIDGKITRAEYNSTMGYFVEVT
GKAGVKTRYLHLNKILVTKGARVTRGGAIALSGNSGRSSGPHLHYELVINNNPVNSLAFRAAAPADNKLEQHAFAHARDY
ERYLD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=210, Percent_Identity=40.9523809523809, Blast_Score=169, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 27005; Mature: 27005

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSTDVVKENAYLSATRSGLESNEIATLQRSLPSRFNLRHLKKNESLKLVLQKKAGKSHV
CCCCCEECCCCEEEHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEEEEECCCCCEE
VAYKFTSGSFNYTAYRISDKKFYNLSDTSGKGSLDYPLPATARLSSPFNPARLNPVSGKV
EEEEEECCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
SPHNGIDYSMPMNTKIVSVIDGKITRAEYNSTMGYFVEVTGKAGVKTRYLHLNKILVTKG
CCCCCCEEECCCCCEEEEEECCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEECC
ARVTRGGAIALSGNSGRSSGPHLHYELVINNNPVNSLAFRAAAPADNKLEQHAFAHARDY
CEEECCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
ERYLD
HHHCC
>Mature Secondary Structure
MYSTDVVKENAYLSATRSGLESNEIATLQRSLPSRFNLRHLKKNESLKLVLQKKAGKSHV
CCCCCEECCCCEEEHHHCCCCCCHHHHHHHHCCCCCCHHHHCCCCCEEEEEEECCCCCEE
VAYKFTSGSFNYTAYRISDKKFYNLSDTSGKGSLDYPLPATARLSSPFNPARLNPVSGKV
EEEEEECCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
SPHNGIDYSMPMNTKIVSVIDGKITRAEYNSTMGYFVEVTGKAGVKTRYLHLNKILVTKG
CCCCCCEEECCCCCEEEEEECCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEECC
ARVTRGGAIALSGNSGRSSGPHLHYELVINNNPVNSLAFRAAAPADNKLEQHAFAHARDY
CEEECCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
ERYLD
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]