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The map label for this gene is ybfD [C]

Identifier: 117676233

GI number: 117676233

Start: 177633

End: 177914

Strand: Direct

Name: ybfD [C]

Synonym: Shewana3_4294

Alternate gene names: 117676233

Gene position: 177633-177914 (Clockwise)

Preceding gene: 117676232

Following gene: 117676236

Centisome position: 63.68

GC content: 45.39

Gene sequence:

>282_bases
ATGCTCTCTTTTTCTTATAGAGAGCATAAGAGCATGTACCTTGAAGCCTTCACATCACATTTCAACTCGATTGCTGACAG
CCGACAATCTGCCAAAGTGACTTACCCGTTGCATGATGTATTGTTCGTCACTCTGTGTGGTGTGATTGCTGGCGCCGAAG
GTTGGTCTGAGATCCACGATTATGCTGTCGGGCACCATAATTGGTTTAAAGAAAAGGGAATTCTGACCGAAGGTGTCCCT
GTCCGGGGGAAGCACAACCTATATTTTCATTTCCATAACTGA

Upstream 100 bases:

>100_bases
AATCCGGCCCTGGGGGGTTACAAACATAAGCAGGGCGAGATCGTGAATATATTTTAACCGTTTTGAGCTAAATTAGACGG
ACGGCATCGATTATGCTCTT

Downstream 100 bases:

>100_bases
AACAAGTCCGGCAGTGTTTATTTCTCCGGGAGTTGGCTGGATATTCATTTCCTGGCGTACTCTGACGCCGGGTATTGATG
AAGCAATCCAGCCTTCCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MLSFSYREHKSMYLEAFTSHFNSIADSRQSAKVTYPLHDVLFVTLCGVIAGAEGWSEIHDYAVGHHNWFKEKGILTEGVP
VRGKHNLYFHFHN

Sequences:

>Translated_93_residues
MLSFSYREHKSMYLEAFTSHFNSIADSRQSAKVTYPLHDVLFVTLCGVIAGAEGWSEIHDYAVGHHNWFKEKGILTEGVP
VRGKHNLYFHFHN
>Mature_93_residues
MLSFSYREHKSMYLEAFTSHFNSIADSRQSAKVTYPLHDVLFVTLCGVIAGAEGWSEIHDYAVGHHNWFKEKGILTEGVP
VRGKHNLYFHFHN

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786924, Length=70, Percent_Identity=41.4285714285714, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1789896, Length=70, Percent_Identity=41.4285714285714, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1787733, Length=70, Percent_Identity=40, Blast_Score=65, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10710; Mature: 10710

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSFSYREHKSMYLEAFTSHFNSIADSRQSAKVTYPLHDVLFVTLCGVIAGAEGWSEIHD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHH
YAVGHHNWFKEKGILTEGVPVRGKHNLYFHFHN
HHCCCCCHHHHCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MLSFSYREHKSMYLEAFTSHFNSIADSRQSAKVTYPLHDVLFVTLCGVIAGAEGWSEIHD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCHHHHHH
YAVGHHNWFKEKGILTEGVPVRGKHNLYFHFHN
HHCCCCCHHHHCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA