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The map label for this gene is pal [C]

Identifier: 117676216

GI number: 117676216

Start: 158929

End: 159672

Strand: Direct

Name: pal [C]

Synonym: Shewana3_4277

Alternate gene names: 117676216

Gene position: 158929-159672 (Clockwise)

Preceding gene: 117676213

Following gene: 117676217

Centisome position: 56.98

GC content: 42.61

Gene sequence:

>744_bases
ATGATGAAAATCAACAAACTAGCAACAGTATCACTGTTCGCCATGATGCTTTCAGCGTGTGCTGTATCAGTATCAACTGA
AAAACCTGAAATTTCTGATTGCTGTAGTAAAACAATTTATGATCAAAATATCAATGTAAGGCATCAACAAAGATACGATG
TTCGGAACCTTTCAGCTGATGCTGGGAGAAAAATAGGCGATCTCGATCTTGCTTTCGAATTGGAAAAGGCGAGAGATGCG
GCTGTTAATGATGGCCGTAGCTCCATGATGAATTACTATCGTGATGTTTACCGTGCAGCAGTTTCATCTGCTTACAGTGA
TAGCTATCTGCCAACGCAAGCGCCAGCTGCAAATGATGAAAAGCGTGATCTGCAACAATTCAATGCTGATGCCCAAATCA
TTATTCACCAACCCACCGATAGAACGCTTTATTTTGAGTATGATGCTGTCGGCTATTCCGATATTGCCGAGGCTCAATAT
GTTTTGGCTAAGCACCGTGATTATCTTTTAAAAACCCACGGTAGAGTGCTGGTTGTTGGTTATGCTGATATTAGTGGCTC
AGCTGATTACAATCTTGCTCTTGGACGCAAACGTGCGGAGCGAGTAAAAAACGAATTGGTCACCAAAGGGGTGCCTAGTG
AACTGATTAGCGTCGTTAGCTATGGGGCTTCGTATTCGCCACCACTTATGAGCGGTCATACTGACAATTTGAAGTTGTGG
CGTAAAGTCGAGTTGTATTATTGA

Upstream 100 bases:

>100_bases
GAAATTCCCTTTCTTCTGATTCATTTGAAAACTTAGAACTCTTCTAAAAAAATGTTATTATATATTAAAAACTTTGCGTT
TAGAAAACTGTGTAGGCCAT

Downstream 100 bases:

>100_bases
GTCGAAAGGCCAATTTTTGCGTCATTTGAAATGTCTGGTCTAATCATAGTCATGATGATTAGTGGAGATTTAAAAATGAA
TAACAGCTATTACAGCCAAC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: OmpA/MotB Domain-Containing Protein; OmpA/MotB; 18K Peptidoglycan-Associated Outer Membrane Lipoprotein

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MMKINKLATVSLFAMMLSACAVSVSTEKPEISDCCSKTIYDQNINVRHQQRYDVRNLSADAGRKIGDLDLAFELEKARDA
AVNDGRSSMMNYYRDVYRAAVSSAYSDSYLPTQAPAANDEKRDLQQFNADAQIIIHQPTDRTLYFEYDAVGYSDIAEAQY
VLAKHRDYLLKTHGRVLVVGYADISGSADYNLALGRKRAERVKNELVTKGVPSELISVVSYGASYSPPLMSGHTDNLKLW
RKVELYY

Sequences:

>Translated_247_residues
MMKINKLATVSLFAMMLSACAVSVSTEKPEISDCCSKTIYDQNINVRHQQRYDVRNLSADAGRKIGDLDLAFELEKARDA
AVNDGRSSMMNYYRDVYRAAVSSAYSDSYLPTQAPAANDEKRDLQQFNADAQIIIHQPTDRTLYFEYDAVGYSDIAEAQY
VLAKHRDYLLKTHGRVLVVGYADISGSADYNLALGRKRAERVKNELVTKGVPSELISVVSYGASYSPPLMSGHTDNLKLW
RKVELYY
>Mature_247_residues
MMKINKLATVSLFAMMLSACAVSVSTEKPEISDCCSKTIYDQNINVRHQQRYDVRNLSADAGRKIGDLDLAFELEKARDA
AVNDGRSSMMNYYRDVYRAAVSSAYSDSYLPTQAPAANDEKRDLQQFNADAQIIIHQPTDRTLYFEYDAVGYSDIAEAQY
VLAKHRDYLLKTHGRVLVVGYADISGSADYNLALGRKRAERVKNELVTKGVPSELISVVSYGASYSPPLMSGHTDNLKLW
RKVELYY

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27738; Mature: 27738

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKINKLATVSLFAMMLSACAVSVSTEKPEISDCCSKTIYDQNINVRHQQRYDVRNLSAD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCHHHCCHH
AGRKIGDLDLAFELEKARDAAVNDGRSSMMNYYRDVYRAAVSSAYSDSYLPTQAPAANDE
HCCCCCCCHHEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
KRDLQQFNADAQIIIHQPTDRTLYFEYDAVGYSDIAEAQYVLAKHRDYLLKTHGRVLVVG
HHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEE
YADISGSADYNLALGRKRAERVKNELVTKGVPSELISVVSYGASYSPPLMSGHTDNLKLW
EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEE
RKVELYY
EEEEECC
>Mature Secondary Structure
MMKINKLATVSLFAMMLSACAVSVSTEKPEISDCCSKTIYDQNINVRHQQRYDVRNLSAD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCHHHCCHH
AGRKIGDLDLAFELEKARDAAVNDGRSSMMNYYRDVYRAAVSSAYSDSYLPTQAPAANDE
HCCCCCCCHHEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
KRDLQQFNADAQIIIHQPTDRTLYFEYDAVGYSDIAEAQYVLAKHRDYLLKTHGRVLVVG
HHHHHHHCCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEE
YADISGSADYNLALGRKRAERVKNELVTKGVPSELISVVSYGASYSPPLMSGHTDNLKLW
EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEE
RKVELYY
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA