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The map label for this gene is traH [C]

Identifier: 117676210

GI number: 117676210

Start: 148511

End: 149905

Strand: Direct

Name: traH [C]

Synonym: Shewana3_4271

Alternate gene names: 117676210

Gene position: 148511-149905 (Clockwise)

Preceding gene: 117676209

Following gene: 117676211

Centisome position: 53.24

GC content: 45.95

Gene sequence:

>1395_bases
ATGAAAAAGAAAGTTATAGTTGCTTTACTTTGTTGCCCGTTATCAGCGACAGCTGCAAGCGGGTTAAACAATTTATGGGA
TCAGATGTTGTCTGCCAGCTCCGGTGCAACTTCATATTCAGGCGCTAAACGTGACGGATTTTCTCTGGGGAGTGCGTCGG
TACGGATTAAAACCACTAACGAAAAGATTGTGGCGGTTAGGGCTCCTTACCTTCAATCATCCTGCAAGGGGATCGACTTC
TTCGGCGGCTCTCTGTCCATTATAAAACGTGAAGAGCTTGTTCAGATGGCAAGATCTATCGCCGCCGCCGCCCCGATGTA
CGCATTCCAATTAGCAATGGGAATGTTATGCCCGGACTGTAATGCAATTCTCGCAGACCTAGCGAAACGCCTCAATGCGT
TAAATGATTTTATCAGCAAAGATTGCGAGGAATGGGCTGATCTGGCCGAGCAACAGTGGCCATCACTTCAGGTACAAAGT
GACCGTAAAATGTGGAAAGCCTACAATGATTCGGCGGGTGCTTGGTTTGATTCATTCGCTTCATCGACGGTTGAGCGCAG
TTCAATAGACTCCCACTCGAAAGCTGCACAGTTGACTCAGGCTGGCGACGAGATGCAGTTCAACTCGGTGTATGAAACCT
TCATGCAGTCTGAAACTACCGTCCCAACCCTATCCTCAGACCGCCATGTCGTCGCTCAAATGTTAATGACTATTTTAGGG
ACTGAAATTTATAAATTCGACAGCACATTAACTGCATCGGCTTCAGCAGGAAGTGATGCGGTCAGTCAGTCATTTAGCCC
ACAAGTTTCATTGAAAGACTTGTATCAGCCTCAAGCGACTACATCAATGGCTGTAGCTAAACAAATGGTGGTCTGTGAGC
AGGCCCAATTTGCCGATAGCAAGTGTCTATCGGCTAAGGTCGCGACTGTACCAATTAGCGATCCACGCTATTTGGATTCG
TTCTATCGATTTTATGGTGATGCAATTTGTGGCTTAGTCGATTCTAACTTAGTCGGTTCGAGCATCATGGCCATCTATGC
TCAGAAAGGAAATTATAGTGATTCTCAAGCACAGATCATGGCCAATATGAGAAGTGAATTTGAAGACATTATTAAACGAG
CCTCAACAGTCAATGTCATCAATACAGGTAATTGTAAGTTTATCTCCGAAGCGATGGCCATAGATGCAACCCAGCAGTTG
CTTGACGGACTACGAATTGCCGCGAGTAAGATGGCTTCGACTGATAAAGGTCAGCGCGGCGCGTTTTCATCAAAGTTGTT
AGAGAAAATCGACGCGCTGAGCCTCGAAAGGGAAGAAATGGCCAACAGAAGACGTGAAATGGAGCAGGAACTATTAAGTC
AGATCAACTTTAGTGCAAGTATGAGAGGTAAGTAA

Upstream 100 bases:

>100_bases
CCAAGGTTGACACGCAAAAAGTGTATGAAGACCCAGACTACCTCATTAACAAGATGCGGAATTTTATGCTCGGAAAACCT
GATAGCGAGGGTGAACAAGA

Downstream 100 bases:

>100_bases
TTCATGTTAACTATCTACTCTCTCGGTGACCTCGATTTATTGATAAAGATGGCGCAATCGGCGGAATTGGCATTCAGTGA
TGGCGGCATTGCAAATAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Conjugative Transfer Protein TraH; TraH Family Protein; F Pilus Assembly Protein TraH; Sex Pilus Assembly Protein; F Pilus Assembly Protein; Type IV Conjugative Transfer System Protein TraH

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MKKKVIVALLCCPLSATAASGLNNLWDQMLSASSGATSYSGAKRDGFSLGSASVRIKTTNEKIVAVRAPYLQSSCKGIDF
FGGSLSIIKREELVQMARSIAAAAPMYAFQLAMGMLCPDCNAILADLAKRLNALNDFISKDCEEWADLAEQQWPSLQVQS
DRKMWKAYNDSAGAWFDSFASSTVERSSIDSHSKAAQLTQAGDEMQFNSVYETFMQSETTVPTLSSDRHVVAQMLMTILG
TEIYKFDSTLTASASAGSDAVSQSFSPQVSLKDLYQPQATTSMAVAKQMVVCEQAQFADSKCLSAKVATVPISDPRYLDS
FYRFYGDAICGLVDSNLVGSSIMAIYAQKGNYSDSQAQIMANMRSEFEDIIKRASTVNVINTGNCKFISEAMAIDATQQL
LDGLRIAASKMASTDKGQRGAFSSKLLEKIDALSLEREEMANRRREMEQELLSQINFSASMRGK

Sequences:

>Translated_464_residues
MKKKVIVALLCCPLSATAASGLNNLWDQMLSASSGATSYSGAKRDGFSLGSASVRIKTTNEKIVAVRAPYLQSSCKGIDF
FGGSLSIIKREELVQMARSIAAAAPMYAFQLAMGMLCPDCNAILADLAKRLNALNDFISKDCEEWADLAEQQWPSLQVQS
DRKMWKAYNDSAGAWFDSFASSTVERSSIDSHSKAAQLTQAGDEMQFNSVYETFMQSETTVPTLSSDRHVVAQMLMTILG
TEIYKFDSTLTASASAGSDAVSQSFSPQVSLKDLYQPQATTSMAVAKQMVVCEQAQFADSKCLSAKVATVPISDPRYLDS
FYRFYGDAICGLVDSNLVGSSIMAIYAQKGNYSDSQAQIMANMRSEFEDIIKRASTVNVINTGNCKFISEAMAIDATQQL
LDGLRIAASKMASTDKGQRGAFSSKLLEKIDALSLEREEMANRRREMEQELLSQINFSASMRGK
>Mature_464_residues
MKKKVIVALLCCPLSATAASGLNNLWDQMLSASSGATSYSGAKRDGFSLGSASVRIKTTNEKIVAVRAPYLQSSCKGIDF
FGGSLSIIKREELVQMARSIAAAAPMYAFQLAMGMLCPDCNAILADLAKRLNALNDFISKDCEEWADLAEQQWPSLQVQS
DRKMWKAYNDSAGAWFDSFASSTVERSSIDSHSKAAQLTQAGDEMQFNSVYETFMQSETTVPTLSSDRHVVAQMLMTILG
TEIYKFDSTLTASASAGSDAVSQSFSPQVSLKDLYQPQATTSMAVAKQMVVCEQAQFADSKCLSAKVATVPISDPRYLDS
FYRFYGDAICGLVDSNLVGSSIMAIYAQKGNYSDSQAQIMANMRSEFEDIIKRASTVNVINTGNCKFISEAMAIDATQQL
LDGLRIAASKMASTDKGQRGAFSSKLLEKIDALSLEREEMANRRREMEQELLSQINFSASMRGK

Specific function: Involved In Pilus Assembly. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50569; Mature: 50569

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKVIVALLCCPLSATAASGLNNLWDQMLSASSGATSYSGAKRDGFSLGSASVRIKTTN
CCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC
EKIVAVRAPYLQSSCKGIDFFGGSLSIIKREELVQMARSIAAAAPMYAFQLAMGMLCPDC
CEEEEEECHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
NAILADLAKRLNALNDFISKDCEEWADLAEQQWPSLQVQSDRKMWKAYNDSAGAWFDSFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHCCCCCHHHHHHH
SSTVERSSIDSHSKAAQLTQAGDEMQFNSVYETFMQSETTVPTLSSDRHVVAQMLMTILG
HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
TEIYKFDSTLTASASAGSDAVSQSFSPQVSLKDLYQPQATTSMAVAKQMVVCEQAQFADS
HHHHHCCCCEECCCCCCCHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCH
KCLSAKVATVPISDPRYLDSFYRFYGDAICGLVDSNLVGSSIMAIYAQKGNYSDSQAQIM
HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCCCHHHHHHH
ANMRSEFEDIIKRASTVNVINTGNCKFISEAMAIDATQQLLDGLRIAASKMASTDKGQRG
HHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AFSSKLLEKIDALSLEREEMANRRREMEQELLSQINFSASMRGK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKKKVIVALLCCPLSATAASGLNNLWDQMLSASSGATSYSGAKRDGFSLGSASVRIKTTN
CCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECC
EKIVAVRAPYLQSSCKGIDFFGGSLSIIKREELVQMARSIAAAAPMYAFQLAMGMLCPDC
CEEEEEECHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
NAILADLAKRLNALNDFISKDCEEWADLAEQQWPSLQVQSDRKMWKAYNDSAGAWFDSFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHCCCCCHHHHHHH
SSTVERSSIDSHSKAAQLTQAGDEMQFNSVYETFMQSETTVPTLSSDRHVVAQMLMTILG
HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
TEIYKFDSTLTASASAGSDAVSQSFSPQVSLKDLYQPQATTSMAVAKQMVVCEQAQFADS
HHHHHCCCCEECCCCCCCHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCH
KCLSAKVATVPISDPRYLDSFYRFYGDAICGLVDSNLVGSSIMAIYAQKGNYSDSQAQIM
HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCCCHHHHHHH
ANMRSEFEDIIKRASTVNVINTGNCKFISEAMAIDATQQLLDGLRIAASKMASTDKGQRG
HHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AFSSKLLEKIDALSLEREEMANRRREMEQELLSQINFSASMRGK
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA