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The map label for this gene is traF [C]

Identifier: 117676209

GI number: 117676209

Start: 147519

End: 148514

Strand: Direct

Name: traF [C]

Synonym: Shewana3_4270

Alternate gene names: 117676209

Gene position: 147519-148514 (Clockwise)

Preceding gene: 117676208

Following gene: 117676210

Centisome position: 52.89

GC content: 46.69

Gene sequence:

>996_bases
ATGAAAGTAAATAAATTGATGGCTTTGATTTTTGCGGCTCTGGCTCTGCCAGTTGTGGCAGAAGATCCTGCAAATAGCAA
TGATGGTGGTAACTTCTATAAACAACGCGAAAAGGGCTGGTATTGGCACGAGTACATTCCTGAGCCCGAAGAAAAGGAAG
AGGAAGAACCTATAGTGCCAACGCCATCTTCTGCACCAACTGAGACTGAAACGAGTAAAAATTCAGTAGAGGCCATGAGC
GTTAAGTGGTTCCAAGAAAACTTGCCCAAGGCAAAGGAGTTGGCGCTTAACACTGGAAAACCAGAAGACGTTAAACGCTA
CCTTTACATCCAGCGTGCCGCAATAGATCGCGCCAACCAGTTTGCCGCTACTTATATTTCCGAACAAATGTTTGACCCTT
ACCTCGATGAAGGGTTACGCCGTCCTGAAAACGACGTGACGCTGCAAACTTTCAAAGGCGCTCAGTCTGAAAACCAATGG
AAGTTAATTGAAGCCATCGGCAAGAAAGCCACCCTCATTTATTTCTACGGCTCTCAGTGTCCGTATTGCGCAAAGCAAAC
TCCCTACCTAATCCGTCTGGCAAAGGAATATGGATGGTCGATCATGCCCGTTTCTCTCGATGGCGGCACCGTTCCAAATG
ATGACTTTTTAGCATTAGGCGATTATCGAGTGGCGACTTCCGACATGGCGCAGCGCTTCGACGTCTTGGCGACACCAACA
CTGTATCTAACCAACAACACGGGTGATTACTTCCTGTTGGGTTCTGGGCTAATCGGCATGGATTCTCTCAGTGAAAGGAT
CATCGAACTCGCTAGCCGCGAGAAAATTATTAGCCAAGCAGAACTTAATAATGTGAAGCAGGTACGAGCTCTGTATATGA
CCGATGCAGAAGCCAAGGTTGACACGCAAAAAGTGTATGAAGACCCAGACTACCTCATTAACAAGATGCGGAATTTTATG
CTCGGAAAACCTGATAGCGAGGGTGAACAAGAATGA

Upstream 100 bases:

>100_bases
GAAAAACAATAAATCAGCCGCCTGCAATTAAGGCGGCTTTTTTTCATCCAGTGAGGCGTGATATATTTAGCCTATAGAAT
ATAAAAAGTGTGTTGGCGTA

Downstream 100 bases:

>100_bases
AAAAGAAAGTTATAGTTGCTTTACTTTGTTGCCCGTTATCAGCGACAGCTGCAAGCGGGTTAAACAATTTATGGGATCAG
ATGTTGTCTGCCAGCTCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Pilus Assembly Protein; Pilus Biogenesis Protein; Sex Pilus Assembly; Conjugal Transfer Protein TraF; Pilus Assembly And Synthesis Protein; TraF Conjugative Transfer Protein; Pilus Assembly

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKVNKLMALIFAALALPVVAEDPANSNDGGNFYKQREKGWYWHEYIPEPEEKEEEEPIVPTPSSAPTETETSKNSVEAMS
VKWFQENLPKAKELALNTGKPEDVKRYLYIQRAAIDRANQFAATYISEQMFDPYLDEGLRRPENDVTLQTFKGAQSENQW
KLIEAIGKKATLIYFYGSQCPYCAKQTPYLIRLAKEYGWSIMPVSLDGGTVPNDDFLALGDYRVATSDMAQRFDVLATPT
LYLTNNTGDYFLLGSGLIGMDSLSERIIELASREKIISQAELNNVKQVRALYMTDAEAKVDTQKVYEDPDYLINKMRNFM
LGKPDSEGEQE

Sequences:

>Translated_331_residues
MKVNKLMALIFAALALPVVAEDPANSNDGGNFYKQREKGWYWHEYIPEPEEKEEEEPIVPTPSSAPTETETSKNSVEAMS
VKWFQENLPKAKELALNTGKPEDVKRYLYIQRAAIDRANQFAATYISEQMFDPYLDEGLRRPENDVTLQTFKGAQSENQW
KLIEAIGKKATLIYFYGSQCPYCAKQTPYLIRLAKEYGWSIMPVSLDGGTVPNDDFLALGDYRVATSDMAQRFDVLATPT
LYLTNNTGDYFLLGSGLIGMDSLSERIIELASREKIISQAELNNVKQVRALYMTDAEAKVDTQKVYEDPDYLINKMRNFM
LGKPDSEGEQE
>Mature_331_residues
MKVNKLMALIFAALALPVVAEDPANSNDGGNFYKQREKGWYWHEYIPEPEEKEEEEPIVPTPSSAPTETETSKNSVEAMS
VKWFQENLPKAKELALNTGKPEDVKRYLYIQRAAIDRANQFAATYISEQMFDPYLDEGLRRPENDVTLQTFKGAQSENQW
KLIEAIGKKATLIYFYGSQCPYCAKQTPYLIRLAKEYGWSIMPVSLDGGTVPNDDFLALGDYRVATSDMAQRFDVLATPT
LYLTNNTGDYFLLGSGLIGMDSLSERIIELASREKIISQAELNNVKQVRALYMTDAEAKVDTQKVYEDPDYLINKMRNFM
LGKPDSEGEQE

Specific function: Involved In F Pilus Assembly. [C]

COG id: COG0526

COG function: function code OC; Thiol-disulfide isomerase and thioredoxins

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37531; Mature: 37531

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVNKLMALIFAALALPVVAEDPANSNDGGNFYKQREKGWYWHEYIPEPEEKEEEEPIVP
CCHHHHHHHHHHHHHHCCEECCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCCCC
TPSSAPTETETSKNSVEAMSVKWFQENLPKAKELALNTGKPEDVKRYLYIQRAAIDRANQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
FAATYISEQMFDPYLDEGLRRPENDVTLQTFKGAQSENQWKLIEAIGKKATLIYFYGSQC
HHHHHHHHHHCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCC
PYCAKQTPYLIRLAKEYGWSIMPVSLDGGTVPNDDFLALGDYRVATSDMAQRFDVLATPT
CCCCCCCCHHEEEHHHHCCEEEEEEECCCCCCCCCEEEECCEEEHHHHHHHHHHHHCCCE
LYLTNNTGDYFLLGSGLIGMDSLSERIIELASREKIISQAELNNVKQVRALYMTDAEAKV
EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHC
DTQKVYEDPDYLINKMRNFMLGKPDSEGEQE
CHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKVNKLMALIFAALALPVVAEDPANSNDGGNFYKQREKGWYWHEYIPEPEEKEEEEPIVP
CCHHHHHHHHHHHHHHCCEECCCCCCCCCCCHHHHHHCCCCHHHCCCCCCCCCCCCCCCC
TPSSAPTETETSKNSVEAMSVKWFQENLPKAKELALNTGKPEDVKRYLYIQRAAIDRANQ
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
FAATYISEQMFDPYLDEGLRRPENDVTLQTFKGAQSENQWKLIEAIGKKATLIYFYGSQC
HHHHHHHHHHCCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCC
PYCAKQTPYLIRLAKEYGWSIMPVSLDGGTVPNDDFLALGDYRVATSDMAQRFDVLATPT
CCCCCCCCHHEEEHHHHCCEEEEEEECCCCCCCCCEEEECCEEEHHHHHHHHHHHHCCCE
LYLTNNTGDYFLLGSGLIGMDSLSERIIELASREKIISQAELNNVKQVRALYMTDAEAKV
EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHC
DTQKVYEDPDYLINKMRNFMLGKPDSEGEQE
CHHHHHCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA