Definition | Borrelia afzelii PKo plasmid lp28, complete sequence. |
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Accession | NC_008568 |
Length | 28,533 |
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The map label for this gene is 117621809
Identifier: 117621809
GI number: 117621809
Start: 9622
End: 10728
Strand: Direct
Name: 117621809
Synonym: BAPKO_4509
Alternate gene names: NA
Gene position: 9622-10728 (Clockwise)
Preceding gene: 117621808
Following gene: 117621811
Centisome position: 33.72
GC content: 21.68
Gene sequence:
>1107_bases ATGATAATAAAAATAAGAAATAATGTCAATAAAAATTTTAACAATCTCATAACTTTAGAAGAGCTTATAAAGCACAACCA AAAAAACACAGCCTCTAATTTAATAGAACTAAAGCAATCAAGACTAAAATCATATTTAACTAAAAAAAAGGCCATATACC AAAGAATACTTAAGGTATGCTGGGCAATTGATCTTAAAAACAAAGAATACTATAAATCTAACAAACTTAGAACATATTCT ACAATAGAAATATATAATATAGTTAATAAATGTCTTGCAAAAGATAATCAAAAAACATCAATCAGAACTTTAGAATATGA TATATCATTTTTAAATCAAGTGCTATTAATAACAACTAAACTAAAACATTTAGGCAAAGATAATGGAAGCTTTGCATTTT ATATACAAAATAAAAATCTTTGGAAACACCGTTTTACAATTATTCAAGAAGCAATTAATGAAGAAATCAAAGAATATTTA AAAGATAAAAAAATAGTATCTAATTTCTCTAAAGAAATTGACAATGCTATTAACAAAACTAATATAAAAAATATAAAATC TAAAAGCTCAATTGCAGATGAATCAATTGCAGATGTTATACCTAAAGGTATAAAGGATACATATAAGATAAAGAATTCTA TAAAAATAGATAATAAAAAAATAAAGAAAATGCCTTATAAAGAATATATTGCAAGCAAGCTAGTAAAAGTTCATAAAATA GAAAAATTTCAAATAACAAAAATATTAAAAATAAGCAACAATGAAAAAACTTACATAAATGCATTAAGAAACTTAAAGCT AGCAATAGAAAAATATAATAAAGAATACAAAATTGAAGACATTTCAAATCATTTTATAAAAGAGTTTAAAAATAAATATA GTAAAAAAATATGGATGATGAACGGAAAGACCGATAAAATAAATGACTTTAATGAAATTTGGGAAACAAGATTTAAGAAA ACGTTCTTAAATAAAAGTTCAAAAGAAAGATATTGTAGTAACTATATAAAAAACAAAAAGAATATTCCTAATCCTGATAA CAGAATAAGTGTGTTTTTTTCTGATCATAAAGGTCTTAAAAAGATAAACAAAATTAAAGTTAATTAA
Upstream 100 bases:
>100_bases ATTTTGTTTGTAATACAATAAAAATTTAGAGTGCAGACCAAATAATTGGAAAAGCTTCTGAAACTACAACAAATTTCACT TCAGAAGCCAGGATAAGATA
Downstream 100 bases:
>100_bases AAAATTATTTGTTATCAATATTAAAAAAATTTTAAATAAAGGTAAAATTGGACAAACCGTTAAATCAAAGATTAACATGG ATGTTAGCCAAAAAAATGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVCWAIDLKNKEYYKSNKLRTYS TIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTKLKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYL KDKKIVSNFSKEIDNAINKTNIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMMNGKTDKINDFNEIWETRFKK TFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLKKINKIKVN
Sequences:
>Translated_368_residues MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVCWAIDLKNKEYYKSNKLRTYS TIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTKLKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYL KDKKIVSNFSKEIDNAINKTNIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMMNGKTDKINDFNEIWETRFKK TFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLKKINKIKVN >Mature_368_residues MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVCWAIDLKNKEYYKSNKLRTYS TIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTKLKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYL KDKKIVSNFSKEIDNAINKTNIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMMNGKTDKINDFNEIWETRFKK TFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLKKINKIKVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43733; Mature: 43733
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVC CEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WAIDLKNKEYYKSNKLRTYSTIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTK HHHCCCCCHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYLKDKKIVSNFSKEIDNAINKT HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEECCHHHHCCCHHHHHHHHHHHHHHH EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMM HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCEEEEE NGKTDKINDFNEIWETRFKKTFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLK CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHH KINKIKVN HHHHCCCC >Mature Secondary Structure MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVC CEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WAIDLKNKEYYKSNKLRTYSTIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTK HHHCCCCCHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH LKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYLKDKKIVSNFSKEIDNAINKT HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEECCHHHHCCCHHHHHHHHHHHHHHH EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMM HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCEEEEE NGKTDKINDFNEIWETRFKKTFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLK CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHH KINKIKVN HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA