Definition Borrelia afzelii PKo plasmid lp28, complete sequence.
Accession NC_008568
Length 28,533

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The map label for this gene is 117621809

Identifier: 117621809

GI number: 117621809

Start: 9622

End: 10728

Strand: Direct

Name: 117621809

Synonym: BAPKO_4509

Alternate gene names: NA

Gene position: 9622-10728 (Clockwise)

Preceding gene: 117621808

Following gene: 117621811

Centisome position: 33.72

GC content: 21.68

Gene sequence:

>1107_bases
ATGATAATAAAAATAAGAAATAATGTCAATAAAAATTTTAACAATCTCATAACTTTAGAAGAGCTTATAAAGCACAACCA
AAAAAACACAGCCTCTAATTTAATAGAACTAAAGCAATCAAGACTAAAATCATATTTAACTAAAAAAAAGGCCATATACC
AAAGAATACTTAAGGTATGCTGGGCAATTGATCTTAAAAACAAAGAATACTATAAATCTAACAAACTTAGAACATATTCT
ACAATAGAAATATATAATATAGTTAATAAATGTCTTGCAAAAGATAATCAAAAAACATCAATCAGAACTTTAGAATATGA
TATATCATTTTTAAATCAAGTGCTATTAATAACAACTAAACTAAAACATTTAGGCAAAGATAATGGAAGCTTTGCATTTT
ATATACAAAATAAAAATCTTTGGAAACACCGTTTTACAATTATTCAAGAAGCAATTAATGAAGAAATCAAAGAATATTTA
AAAGATAAAAAAATAGTATCTAATTTCTCTAAAGAAATTGACAATGCTATTAACAAAACTAATATAAAAAATATAAAATC
TAAAAGCTCAATTGCAGATGAATCAATTGCAGATGTTATACCTAAAGGTATAAAGGATACATATAAGATAAAGAATTCTA
TAAAAATAGATAATAAAAAAATAAAGAAAATGCCTTATAAAGAATATATTGCAAGCAAGCTAGTAAAAGTTCATAAAATA
GAAAAATTTCAAATAACAAAAATATTAAAAATAAGCAACAATGAAAAAACTTACATAAATGCATTAAGAAACTTAAAGCT
AGCAATAGAAAAATATAATAAAGAATACAAAATTGAAGACATTTCAAATCATTTTATAAAAGAGTTTAAAAATAAATATA
GTAAAAAAATATGGATGATGAACGGAAAGACCGATAAAATAAATGACTTTAATGAAATTTGGGAAACAAGATTTAAGAAA
ACGTTCTTAAATAAAAGTTCAAAAGAAAGATATTGTAGTAACTATATAAAAAACAAAAAGAATATTCCTAATCCTGATAA
CAGAATAAGTGTGTTTTTTTCTGATCATAAAGGTCTTAAAAAGATAAACAAAATTAAAGTTAATTAA

Upstream 100 bases:

>100_bases
ATTTTGTTTGTAATACAATAAAAATTTAGAGTGCAGACCAAATAATTGGAAAAGCTTCTGAAACTACAACAAATTTCACT
TCAGAAGCCAGGATAAGATA

Downstream 100 bases:

>100_bases
AAAATTATTTGTTATCAATATTAAAAAAATTTTAAATAAAGGTAAAATTGGACAAACCGTTAAATCAAAGATTAACATGG
ATGTTAGCCAAAAAAATGAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVCWAIDLKNKEYYKSNKLRTYS
TIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTKLKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYL
KDKKIVSNFSKEIDNAINKTNIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI
EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMMNGKTDKINDFNEIWETRFKK
TFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLKKINKIKVN

Sequences:

>Translated_368_residues
MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVCWAIDLKNKEYYKSNKLRTYS
TIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTKLKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYL
KDKKIVSNFSKEIDNAINKTNIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI
EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMMNGKTDKINDFNEIWETRFKK
TFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLKKINKIKVN
>Mature_368_residues
MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVCWAIDLKNKEYYKSNKLRTYS
TIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTKLKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYL
KDKKIVSNFSKEIDNAINKTNIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI
EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMMNGKTDKINDFNEIWETRFKK
TFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLKKINKIKVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43733; Mature: 43733

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVC
CEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WAIDLKNKEYYKSNKLRTYSTIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTK
HHHCCCCCHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYLKDKKIVSNFSKEIDNAINKT
HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEECCHHHHCCCHHHHHHHHHHHHHHH
EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMM
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCEEEEE
NGKTDKINDFNEIWETRFKKTFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLK
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHH
KINKIKVN
HHHHCCCC
>Mature Secondary Structure
MIIKIRNNVNKNFNNLITLEELIKHNQKNTASNLIELKQSRLKSYLTKKKAIYQRILKVC
CEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WAIDLKNKEYYKSNKLRTYSTIEIYNIVNKCLAKDNQKTSIRTLEYDISFLNQVLLITTK
HHHCCCCCHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LKHLGKDNGSFAFYIQNKNLWKHRFTIIQEAINEEIKEYLKDKKIVSNFSKEIDNAINKT
HHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIKNIKSKSSIADESIADVIPKGIKDTYKIKNSIKIDNKKIKKMPYKEYIASKLVKVHKI
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEECCHHHHCCCHHHHHHHHHHHHHHH
EKFQITKILKISNNEKTYINALRNLKLAIEKYNKEYKIEDISNHFIKEFKNKYSKKIWMM
HHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCEEEEE
NGKTDKINDFNEIWETRFKKTFLNKSSKERYCSNYIKNKKNIPNPDNRISVFFSDHKGLK
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHH
KINKIKVN
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA