Definition Borrelia afzelii PKo plasmid lp28, complete sequence.
Accession NC_008568
Length 28,533

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The map label for this gene is 117621806

Identifier: 117621806

GI number: 117621806

Start: 7231

End: 7809

Strand: Reverse

Name: 117621806

Synonym: BAPKO_4506

Alternate gene names: NA

Gene position: 7809-7231 (Counterclockwise)

Preceding gene: 117621810

Following gene: 117621803

Centisome position: 27.37

GC content: 25.39

Gene sequence:

>579_bases
ATGAATGCAAAATTTATTGTAAAATGTTTTATTTCGGTATTTTTTTTAATTTCTTGTCAAACTTATCAAATAGCTTATGA
TAGGTTTTCTCAAGTATTAGATTCTCAATATGATATTGGGGTAAATTATTCTAGAGATGGAATATTTAGGTCTGTAATTT
CGATTAAATATGATAAGTCAAAAAATAAAAAAGAATATTTTATTTTGGTTAAAGTTGAGACTAGAAATTCTAATCAAATA
AAGATTGAAAAGATAATCACAGATACTAGGTTTGAGTCTAAAGGGGAGCTGGTTTTAGAAAATAGTAAACGCGTTGTTTA
TTATAACGATTTTTATGATTCATATTTTCCTTATGATTCTACAACGGTGATTACTGAAAAAAATATTAAGGTAGAAATTT
ATAAATTTATTATTCCAGAAAGCGAGTTTATAAGATTTGTTGCTTTGGGTAATGATAATATAGCGGCATTTAGAATTTAT
GCGTTTAGGAATGATGTTATTGTGAATTTTAATAAGATTCCTTTCAAAGAATTTTTGGATGATTTTAACTCAAAAGTTAA
ACAACTTGGTGGAAGTTGA

Upstream 100 bases:

>100_bases
AAATTAGAATGTTTTTATTTAAATGTATTATATTATTTAATTTTCTGATTTCGAGAAATTTTTTAAAAATAAATATAAGA
TAAAATAAAGGGAGATTTTA

Downstream 100 bases:

>100_bases
TTTGAGTTTGAATAATTTTTAAGCTTAAGCTAAATGATTATTACTAGGAAGGAGATATATTAAGAATATTTAGTATAAAC
AAGTTTTTTTAATATTAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKSKNKKEYFILVKVETRNSNQI
KIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDSTTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIY
AFRNDVIVNFNKIPFKEFLDDFNSKVKQLGGS

Sequences:

>Translated_192_residues
MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKSKNKKEYFILVKVETRNSNQI
KIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDSTTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIY
AFRNDVIVNFNKIPFKEFLDDFNSKVKQLGGS
>Mature_192_residues
MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKSKNKKEYFILVKVETRNSNQI
KIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDSTTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIY
AFRNDVIVNFNKIPFKEFLDDFNSKVKQLGGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22652; Mature: 22652

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKS
CCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCEECCCHHHEEHEEEEECCC
KNKKEYFILVKVETRNSNQIKIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDS
CCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEECCCEEEEEECCCCCCCCCCC
TTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIYAFRNDVIVNFNKIPFKEFLD
EEEEEECCCEEEEEEEECCCHHHEEEEEECCCCEEEEEEEEEECCEEEEECCCCHHHHHH
DFNSKVKQLGGS
HHHHHHHHHCCC
>Mature Secondary Structure
MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKS
CCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCEECCCHHHEEHEEEEECCC
KNKKEYFILVKVETRNSNQIKIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDS
CCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEECCCEEEEEECCCCCCCCCCC
TTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIYAFRNDVIVNFNKIPFKEFLD
EEEEEECCCEEEEEEEECCCHHHEEEEEECCCCEEEEEEEEEECCEEEEECCCCHHHHHH
DFNSKVKQLGGS
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8932323; 9403685 [H]