Definition Borrelia afzelii PKo plasmid lp28, complete sequence.
Accession NC_008568
Length 28,533

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The map label for this gene is 117621804

Identifier: 117621804

GI number: 117621804

Start: 4910

End: 5569

Strand: Direct

Name: 117621804

Synonym: BAPKO_4504

Alternate gene names: NA

Gene position: 4910-5569 (Clockwise)

Preceding gene: NA

Following gene: 117621805

Centisome position: 17.21

GC content: 28.79

Gene sequence:

>660_bases
ATGCAAAAAGAAACAACAAGAAACTATAATGAATATACAATTGGAGGCATAAAGGGAACTTTCTTTGGGAATTCCCAATA
TGAGGCTAATTATCGGGCAAAAATAAATGGCTTTATAATCGACTTTTTTAAAATTCCCATAAGCTTAAAGAAAAAATATG
AACTTAATATTAAAGCCCTTAGTAACCCTAATTTTTCATCCACAAATATTGCAATGAATTGCATAAATACTTTTAAACTT
ATAGTTGACATTATCAATATGCAAACTGGAGAAAATTACGATTACGACACATTTATTACAAAAACAAAAACAGAAAAAAT
GCTTAAATATGGAACAAAAATAATTGCCGCACTGGCAAGACACTACGACGAACAAAACAAAACCACCTTCAATGAAAACT
ATTATGAATGGGAAAAAGGCTGGATAGATAAAAAATGGATAAATTATGAACCAACTGAAGCAGAAATTAAAGAAATTCAA
ACAATGAATCAAAAACTAAGCCCCTTAAAACTTAAAAATGAAGAAAAGGCCCTTAATGAAGGGCATATAAAGCTTTTAAA
AGCTATCAATAAAATTGATAGCCCAAAACAAAATCACGCTAAACCAAATAGCAAAACTAAAAAATTAAAAGGAAATAATA
GGAAAGAAGCCAAAATATAG

Upstream 100 bases:

>100_bases
TTTTATTTGTAATGTGTATTAATTGATATATAATATCAATTAATACATTATATTATATTGTAATATATTAATTATAATAA
TATATTTTTTAAAGGAAAAA

Downstream 100 bases:

>100_bases
CATTTTAAATTAAAATGTTATATTTTATTTATTATTATTAAATAATATTTACAAAATTAAAAAAATAAAATATTATATAC
ATATAAGGTAGAAAACTATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MQKETTRNYNEYTIGGIKGTFFGNSQYEANYRAKINGFIIDFFKIPISLKKKYELNIKALSNPNFSSTNIAMNCINTFKL
IVDIINMQTGENYDYDTFITKTKTEKMLKYGTKIIAALARHYDEQNKTTFNENYYEWEKGWIDKKWINYEPTEAEIKEIQ
TMNQKLSPLKLKNEEKALNEGHIKLLKAINKIDSPKQNHAKPNSKTKKLKGNNRKEAKI

Sequences:

>Translated_219_residues
MQKETTRNYNEYTIGGIKGTFFGNSQYEANYRAKINGFIIDFFKIPISLKKKYELNIKALSNPNFSSTNIAMNCINTFKL
IVDIINMQTGENYDYDTFITKTKTEKMLKYGTKIIAALARHYDEQNKTTFNENYYEWEKGWIDKKWINYEPTEAEIKEIQ
TMNQKLSPLKLKNEEKALNEGHIKLLKAINKIDSPKQNHAKPNSKTKKLKGNNRKEAKI
>Mature_219_residues
MQKETTRNYNEYTIGGIKGTFFGNSQYEANYRAKINGFIIDFFKIPISLKKKYELNIKALSNPNFSSTNIAMNCINTFKL
IVDIINMQTGENYDYDTFITKTKTEKMLKYGTKIIAALARHYDEQNKTTFNENYYEWEKGWIDKKWINYEPTEAEIKEIQ
TMNQKLSPLKLKNEEKALNEGHIKLLKAINKIDSPKQNHAKPNSKTKKLKGNNRKEAKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25600; Mature: 25600

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKETTRNYNEYTIGGIKGTFFGNSQYEANYRAKINGFIIDFFKIPISLKKKYELNIKAL
CCCCCCCCCCCEEECCEEEEEECCCCCCCCEEEEECEEEEEEEECCEEECCEEEEEEEEE
SNPNFSSTNIAMNCINTFKLIVDIINMQTGENYDYDTFITKTKTEKMLKYGTKIIAALAR
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHH
HYDEQNKTTFNENYYEWEKGWIDKKWINYEPTEAEIKEIQTMNQKLSPLKLKNEEKALNE
HHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCHHHHHHH
GHIKLLKAINKIDSPKQNHAKPNSKTKKLKGNNRKEAKI
HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure
MQKETTRNYNEYTIGGIKGTFFGNSQYEANYRAKINGFIIDFFKIPISLKKKYELNIKAL
CCCCCCCCCCCEEECCEEEEEECCCCCCCCEEEEECEEEEEEEECCEEECCEEEEEEEEE
SNPNFSSTNIAMNCINTFKLIVDIINMQTGENYDYDTFITKTKTEKMLKYGTKIIAALAR
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEECHHHHHHHHHHHHHHHHHHH
HYDEQNKTTFNENYYEWEKGWIDKKWINYEPTEAEIKEIQTMNQKLSPLKLKNEEKALNE
HHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCHHHHHHH
GHIKLLKAINKIDSPKQNHAKPNSKTKKLKGNNRKEAKI
HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8932323; 9403685 [H]