Definition | Borrelia afzelii PKo plasmid lp60-2, complete sequence. |
---|---|
Accession | NC_008565 |
Length | 59,804 |
Click here to switch to the map view.
The map label for this gene is 117621666
Identifier: 117621666
GI number: 117621666
Start: 17628
End: 18611
Strand: Reverse
Name: 117621666
Synonym: BAPKO_2519
Alternate gene names: NA
Gene position: 18611-17628 (Counterclockwise)
Preceding gene: 117621668
Following gene: 117621665
Centisome position: 31.12
GC content: 28.76
Gene sequence:
>984_bases ATGAAATATAATATAATTGTAAGCTTGTTTGTTTTTTTATTTTTAGCTTGCAATCCGGATTTTAACACCAATCAAAAAGA TATAAAGTATCATTCTAGTAAAAAAAGAATAAAATCTAATAAAAAAAGAATAAAATCTAATAAAAAAGGATTAAGCCCTA AAACAGAAGTAAACCAAAAAAATCAAGAAGTAGCAAACCAAAATCAAGAAGTAGCAAACCAAAATCAAGAAGTAGCAAAC CAAAATCAAGAAGTAGCAAACCAAAATCAAGAAGTAACAGACCAAAATCAAGAAGTAACAGACCAAAATCAAGAAGTAAC AGACCAAAATCAAGAAGTAACAGACCAAAATCAAGAAGTAACAGACCAAAATCAAAGGAAAAAAAACATGCTGCTTAATG ATTTAAGAAACTTAATAGAAAAAGCAAACGCAGATAAAGAAAAATATGAAAAAAGATTAAAAGAAGAACCTACGGACCAA TATGGAATAGGGGCTTTCAAAAGATTGAGATGGCATGAAGAACCACGCGAAACAGTATCCGATAATTCCGAAAGATCTAA AGCCTATAGAAAATTGACTTACGGGATCTTAAATGATATGAATACTAGTGAATTAAAGAAATTTTCAGAAATTATAATAT TGGCAAATGAAGTAGAAGGCATATTTAATACCTCTAGCGCATTGGGGGGCAATATCGACTACGTGATTATTCACCTATAT CCCAAAAAAGATAATCTAGACAAACTAGAGATTTCGGATTTAGAGAATCTTAAAGATTTGTTTGAAAAATTATTATCTAC AAAAGCAATCGTCTCAAAAATGTTAAAACAACTTTTATTAGATTATCAAGATAATAAGAATTCTATACAAACAGATACCA CCAAGCTTAAACTTCATGTAGAGGAAATTATAAAACAAATTGAAGAAAACCAGGAAGAAGCAGAAAAGCTAAAAAGTGAC ATACTTTCAATAAAAAACTTTTAA
Upstream 100 bases:
>100_bases ACTAATATTGAATTATATTAATTAATAATTAATAATAATTATTATATTATATTAATATTGCATTATATTAATTATTAGAT TTAAAGTAAGGAGAGTATTT
Downstream 100 bases:
>100_bases GTGGTATTAAAATTATAATAATATAAAAGCCTATCTTTATTAAAGATAGGCTTAATGTTTTAGCTAAAGATTGCAAATAA CTTTTCACCTATGATTTAGA
Product: hypothetical protein
Products: NA
Alternate protein names: Virulent Strain Associated Lipoprotein; Antigen P; Borrelia Virulent Strain Associated Lipoprotein; Surface Protein
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MKYNIIVSLFVFLFLACNPDFNTNQKDIKYHSSKKRIKSNKKRIKSNKKGLSPKTEVNQKNQEVANQNQEVANQNQEVAN QNQEVANQNQEVTDQNQEVTDQNQEVTDQNQEVTDQNQEVTDQNQRKKNMLLNDLRNLIEKANADKEKYEKRLKEEPTDQ YGIGAFKRLRWHEEPRETVSDNSERSKAYRKLTYGILNDMNTSELKKFSEIIILANEVEGIFNTSSALGGNIDYVIIHLY PKKDNLDKLEISDLENLKDLFEKLLSTKAIVSKMLKQLLLDYQDNKNSIQTDTTKLKLHVEEIIKQIEENQEEAEKLKSD ILSIKNF
Sequences:
>Translated_327_residues MKYNIIVSLFVFLFLACNPDFNTNQKDIKYHSSKKRIKSNKKRIKSNKKGLSPKTEVNQKNQEVANQNQEVANQNQEVAN QNQEVANQNQEVTDQNQEVTDQNQEVTDQNQEVTDQNQEVTDQNQRKKNMLLNDLRNLIEKANADKEKYEKRLKEEPTDQ YGIGAFKRLRWHEEPRETVSDNSERSKAYRKLTYGILNDMNTSELKKFSEIIILANEVEGIFNTSSALGGNIDYVIIHLY PKKDNLDKLEISDLENLKDLFEKLLSTKAIVSKMLKQLLLDYQDNKNSIQTDTTKLKLHVEEIIKQIEENQEEAEKLKSD ILSIKNF >Mature_327_residues MKYNIIVSLFVFLFLACNPDFNTNQKDIKYHSSKKRIKSNKKRIKSNKKGLSPKTEVNQKNQEVANQNQEVANQNQEVAN QNQEVANQNQEVTDQNQEVTDQNQEVTDQNQEVTDQNQEVTDQNQRKKNMLLNDLRNLIEKANADKEKYEKRLKEEPTDQ YGIGAFKRLRWHEEPRETVSDNSERSKAYRKLTYGILNDMNTSELKKFSEIIILANEVEGIFNTSSALGGNIDYVIIHLY PKKDNLDKLEISDLENLKDLFEKLLSTKAIVSKMLKQLLLDYQDNKNSIQTDTTKLKLHVEEIIKQIEENQEEAEKLKSD ILSIKNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38099; Mature: 38099
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYNIIVSLFVFLFLACNPDFNTNQKDIKYHSSKKRIKSNKKRIKSNKKGLSPKTEVNQK CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHH NQEVANQNQEVANQNQEVANQNQEVANQNQEVTDQNQEVTDQNQEVTDQNQEVTDQNQEV HHHHHHCHHHHHHCHHHHHHCHHHHHCCCCHHCCCCHHHHCCCHHHHCCCHHHHCCCHHH TDQNQRKKNMLLNDLRNLIEKANADKEKYEKRLKEEPTDQYGIGAFKRLRWHEEPRETVS HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHC DNSERSKAYRKLTYGILNDMNTSELKKFSEIIILANEVEGIFNTSSALGGNIDYVIIHLY CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEE PKKDNLDKLEISDLENLKDLFEKLLSTKAIVSKMLKQLLLDYQDNKNSIQTDTTKLKLHV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH EEIIKQIEENQEEAEKLKSDILSIKNF HHHHHHHHHCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKYNIIVSLFVFLFLACNPDFNTNQKDIKYHSSKKRIKSNKKRIKSNKKGLSPKTEVNQK CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCHH NQEVANQNQEVANQNQEVANQNQEVANQNQEVTDQNQEVTDQNQEVTDQNQEVTDQNQEV HHHHHHCHHHHHHCHHHHHHCHHHHHCCCCHHCCCCHHHHCCCHHHHCCCHHHHCCCHHH TDQNQRKKNMLLNDLRNLIEKANADKEKYEKRLKEEPTDQYGIGAFKRLRWHEEPRETVS HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHC DNSERSKAYRKLTYGILNDMNTSELKKFSEIIILANEVEGIFNTSSALGGNIDYVIIHLY CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEE PKKDNLDKLEISDLENLKDLFEKLLSTKAIVSKMLKQLLLDYQDNKNSIQTDTTKLKLHV CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH EEIIKQIEENQEEAEKLKSDILSIKNF HHHHHHHHHCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA