Definition | Borrelia afzelii PKo plasmid lp60-2, complete sequence. |
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Accession | NC_008565 |
Length | 59,804 |
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The map label for this gene is 117621651
Identifier: 117621651
GI number: 117621651
Start: 2513
End: 3337
Strand: Direct
Name: 117621651
Synonym: BAPKO_2504
Alternate gene names: NA
Gene position: 2513-3337 (Clockwise)
Preceding gene: 117621650
Following gene: 117621652
Centisome position: 4.2
GC content: 25.33
Gene sequence:
>825_bases ATGAAATATAATATAATTGTAAGCATATTTGTTTTTTTATTTTTAAATGCTTGCAATCCAGATTTTAAAACCAATCAAAA AGATATGAAGGATCAATCTAGTAAAAAAGAACTAAAATCCAATAAAGAGGGATTAAAAACCAAAACAACAGTAACCCCAA ATCAAGAAGCAAACCCAAATCAAGAAAAAACCTCTAATAAAAGAATAAAAAACACACCTCTTGACGATCTAAGAAATTTA ATAGAAACAGCTAATATCGATAGACAAAAATATGTAAAAAAATTGGAAGAAGAACCTTCAGACCAATATGGAATATTGGC TTTCAAAAAATTAGTTTGGGTGGGAAATTTATCCAGTGAAAAGATAGCTGATAATAGCGATAAATCTAAAAGATATAGAA AATATATTTATGCCACTTTAAATGCTATTGACACTAATAAATTAAAGGAATTTTCAGAAATTATAATATTATCGGGACAA ACACAAAGCCTATTTAGCATCTTTAACGAATTTGGAAGTGCTATTGACGACGTGATTGTTTATCTATATTCTAAAAAAGA CACTATAAATAAACTAGACACTTTAGACTTAGAGAAGCTTAAAAATTCATTTGAGAAATTATTATCTACAAAAACAATCG TTTCAGAAATGTTAAACCAACTTTTATTAGATTATCAAAATAATAAAAATCTTATAAAAACAAATTTTACTAAACTCAAA TCTTATGTAATTGAACTTTACAAACAACTTGTAAAAAAAAGGGAAGAATCTGAAAATCTAAAAAACGACATAATTTCAAT ATATACCTTAAAGGTTATGTATTGA
Upstream 100 bases:
>100_bases TGATTATTATCTCATATATATTTATTATAATCTAATTATATTAGATTGAATATTATATTATATTAAATATAATATAATAT TTTAAATAAGGAGAATATTT
Downstream 100 bases:
>100_bases AATTGTCATAATGTAAAAGCCTATCTTCAATAAAAGATAGGCTTAATGTTTTAACTAAAAATTGCAAAGAATTTTCCATC TATAATTTACATAAACTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Virulent Strain Associated Lipoprotein; Antigen P; Borrelia Virulent Strain Associated Lipoprotein; Surface Protein
Number of amino acids: Translated: 274; Mature: 274
Protein sequence:
>274_residues MKYNIIVSIFVFLFLNACNPDFKTNQKDMKDQSSKKELKSNKEGLKTKTTVTPNQEANPNQEKTSNKRIKNTPLDDLRNL IETANIDRQKYVKKLEEEPSDQYGILAFKKLVWVGNLSSEKIADNSDKSKRYRKYIYATLNAIDTNKLKEFSEIIILSGQ TQSLFSIFNEFGSAIDDVIVYLYSKKDTINKLDTLDLEKLKNSFEKLLSTKTIVSEMLNQLLLDYQNNKNLIKTNFTKLK SYVIELYKQLVKKREESENLKNDIISIYTLKVMY
Sequences:
>Translated_274_residues MKYNIIVSIFVFLFLNACNPDFKTNQKDMKDQSSKKELKSNKEGLKTKTTVTPNQEANPNQEKTSNKRIKNTPLDDLRNL IETANIDRQKYVKKLEEEPSDQYGILAFKKLVWVGNLSSEKIADNSDKSKRYRKYIYATLNAIDTNKLKEFSEIIILSGQ TQSLFSIFNEFGSAIDDVIVYLYSKKDTINKLDTLDLEKLKNSFEKLLSTKTIVSEMLNQLLLDYQNNKNLIKTNFTKLK SYVIELYKQLVKKREESENLKNDIISIYTLKVMY >Mature_274_residues MKYNIIVSIFVFLFLNACNPDFKTNQKDMKDQSSKKELKSNKEGLKTKTTVTPNQEANPNQEKTSNKRIKNTPLDDLRNL IETANIDRQKYVKKLEEEPSDQYGILAFKKLVWVGNLSSEKIADNSDKSKRYRKYIYATLNAIDTNKLKEFSEIIILSGQ TQSLFSIFNEFGSAIDDVIVYLYSKKDTINKLDTLDLEKLKNSFEKLLSTKTIVSEMLNQLLLDYQNNKNLIKTNFTKLK SYVIELYKQLVKKREESENLKNDIISIYTLKVMY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31911; Mature: 31911
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYNIIVSIFVFLFLNACNPDFKTNQKDMKDQSSKKELKSNKEGLKTKTTVTPNQEANPN CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC QEKTSNKRIKNTPLDDLRNLIETANIDRQKYVKKLEEEPSDQYGILAFKKLVWVGNLSSE HHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH KIADNSDKSKRYRKYIYATLNAIDTNKLKEFSEIIILSGQTQSLFSIFNEFGSAIDDVIV HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHH YLYSKKDTINKLDTLDLEKLKNSFEKLLSTKTIVSEMLNQLLLDYQNNKNLIKTNFTKLK HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH SYVIELYKQLVKKREESENLKNDIISIYTLKVMY HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC >Mature Secondary Structure MKYNIIVSIFVFLFLNACNPDFKTNQKDMKDQSSKKELKSNKEGLKTKTTVTPNQEANPN CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC QEKTSNKRIKNTPLDDLRNLIETANIDRQKYVKKLEEEPSDQYGILAFKKLVWVGNLSSE HHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHH KIADNSDKSKRYRKYIYATLNAIDTNKLKEFSEIIILSGQTQSLFSIFNEFGSAIDDVIV HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHH YLYSKKDTINKLDTLDLEKLKNSFEKLLSTKTIVSEMLNQLLLDYQNNKNLIKTNFTKLK HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH SYVIELYKQLVKKREESENLKNDIISIYTLKVMY HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA