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The map label for this gene is dapL [H]

Identifier: 116872414

GI number: 116872414

Start: 1016548

End: 1017663

Strand: Direct

Name: dapL [H]

Synonym: lwe0996

Alternate gene names: 116872414

Gene position: 1016548-1017663 (Clockwise)

Preceding gene: 116872413

Following gene: 116872416

Centisome position: 36.12

GC content: 38.17

Gene sequence:

>1116_bases
ATGCTAAATGAATTTATAGCCATTCGTCGTGATTTACATCAAATTCCTGAAACAGGCTACAAAGAACTAAAAACACAAGC
TTATTTACTAGCGTATATTAGTAAGTTACCAAACAAGCATTTAGAAGTGAAAAAATGGCGTACGGGAATTTTAGTCTTAG
TAAAAGGGACAAAGCCTGAAAAAACCATTGGTTATCGCACAGATATTGATGCGCTGCCAATCACGGAAGAAACAGGACTA
CCATTTGAATCGAACCATGTTGGTAATATGCATGCTTGTGGTCATGATTTACATATGAGTATTGCGCTTGGTGTTTTGAC
TCATTTTGCAAGTAAACCGGCAAAAGATAATTTGCTTTTCGTTTTCCAACCTGCAGAAGAAGGACCGGGCGGCGCAAAAC
CAATCATGGAAAGTGAGGAATTTGCAGCTTGGCGACCTGATACTATTTATGGTCTTCATATCGCACCAGAATACAAGGTC
GGAGAAATCGCTATCAAGCCAGGTTTGTTATTCGCTAATACTTCAGAATTATTTATTTCATTCAAAGGAAAAGGTGGGCA
TGCCGCATATCCACATTTAGCGAATGATATGGTTGTTGCAGCAAGCGCCTTTGTTGGACAAATGCAAACCATCATTAGTC
GTAATATTGATCCAATGGATAGCGCGGTTATAACGATTGGACGCATTCACGGCGGAGAAATTCAAAATGTTATTGCAGAA
ACTGCTTTTCTCGACGGAACGATTCGGACCCTTTCACCAGAAACAATGGAAATCGTTTGGACTCGTTTGAAACAATTAGC
TAAAGGGTGGGAAGAAGCTTATCAATGTGAAGTGGAATTTCATCCTGGATCAGATTATTACCAAGTAGATAATGAGCCAT
TAGAAACAGAAGAATTTATCCGATTTTTAAAAGAACACTATCCTGAAAGTTATGTACCAGCTCGTTCAGCGATGACTGGT
GAAGATTTTGGCTACTTTTTATCGGAAATTAAGGGTTTTATGTTTTGGCTTGGGGTGGACTCGGAATACAGTTTACATCA
CGCAAAATTAAATCCAAAAGAAGAAGCAATCCCATTTGCAATTGATGTTTTAATAAACTTTTTAGAAAGTAAATAA

Upstream 100 bases:

>100_bases
TCTAAAACAGAAATTATGCAAGAACTTCGTCAACTTTAAAACCTAAGGGAACTGTTTCGTCTTTTGGCGGAACAGTCCTT
TTTAAAAGGAGAGAATTGTC

Downstream 100 bases:

>100_bases
AAAGACGTAAATTCGTTCTCAAAATGAGCGAATTTACGTCTTTTTAATTATTATTTGGGCCGAACGTGCTAACAAAACTT
AGCGGTAGTTCGATTTCATT

Product: M20/M25/M40 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MLNEFIAIRRDLHQIPETGYKELKTQAYLLAYISKLPNKHLEVKKWRTGILVLVKGTKPEKTIGYRTDIDALPITEETGL
PFESNHVGNMHACGHDLHMSIALGVLTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKV
GEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
TAFLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNEPLETEEFIRFLKEHYPESYVPARSAMTG
EDFGYFLSEIKGFMFWLGVDSEYSLHHAKLNPKEEAIPFAIDVLINFLESK

Sequences:

>Translated_371_residues
MLNEFIAIRRDLHQIPETGYKELKTQAYLLAYISKLPNKHLEVKKWRTGILVLVKGTKPEKTIGYRTDIDALPITEETGL
PFESNHVGNMHACGHDLHMSIALGVLTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKV
GEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
TAFLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNEPLETEEFIRFLKEHYPESYVPARSAMTG
EDFGYFLSEIKGFMFWLGVDSEYSLHHAKLNPKEEAIPFAIDVLINFLESK
>Mature_371_residues
MLNEFIAIRRDLHQIPETGYKELKTQAYLLAYISKLPNKHLEVKKWRTGILVLVKGTKPEKTIGYRTDIDALPITEETGL
PFESNHVGNMHACGHDLHMSIALGVLTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKV
GEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
TAFLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNEPLETEEFIRFLKEHYPESYVPARSAMTG
EDFGYFLSEIKGFMFWLGVDSEYSLHHAKLNPKEEAIPFAIDVLINFLESK

Specific function: Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family. DapL subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=320, Percent_Identity=25.3125, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.47 [H]

Molecular weight: Translated: 41659; Mature: 41659

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNEFIAIRRDLHQIPETGYKELKTQAYLLAYISKLPNKHLEVKKWRTGILVLVKGTKPE
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEHEEECCEEEEEEECCCCC
KTIGYRTDIDALPITEETGLPFESNHVGNMHACGHDLHMSIALGVLTHFASKPAKDNLLF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
VFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKVGEIAIKPGLLFANTSELFIS
EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCEEEECCCEEEEE
FKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
EECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHH
TAFLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNEPLETEEFI
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEECCCCCCCHHHHH
RFLKEHYPESYVPARSAMTGEDFGYFLSEIKGFMFWLGVDSEYSLHHAKLNPKEEAIPFA
HHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHEEEEEECCCCCCEEEECCCCCHHCCCHH
IDVLINFLESK
HHHHHHHHHCC
>Mature Secondary Structure
MLNEFIAIRRDLHQIPETGYKELKTQAYLLAYISKLPNKHLEVKKWRTGILVLVKGTKPE
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEHEEECCEEEEEEECCCCC
KTIGYRTDIDALPITEETGLPFESNHVGNMHACGHDLHMSIALGVLTHFASKPAKDNLLF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEE
VFQPAEEGPGGAKPIMESEEFAAWRPDTIYGLHIAPEYKVGEIAIKPGLLFANTSELFIS
EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCEEEECCCEEEEE
FKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDPMDSAVITIGRIHGGEIQNVIAE
EECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHH
TAFLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQCEVEFHPGSDYYQVDNEPLETEEFI
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEECCCCCCCHHHHH
RFLKEHYPESYVPARSAMTGEDFGYFLSEIKGFMFWLGVDSEYSLHHAKLNPKEEAIPFA
HHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHEEEEEECCCCCCEEEECCCCCHHCCCHH
IDVLINFLESK
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA