Click here to switch to the map view.

The map label for this gene is ypdB [C]

Identifier: 116872385

GI number: 116872385

Start: 990250

End: 990693

Strand: Direct

Name: ypdB [C]

Synonym: lwe0967

Alternate gene names: 116872385

Gene position: 990250-990693 (Clockwise)

Preceding gene: 116872384

Following gene: 116872386

Centisome position: 35.19

GC content: 31.76

Gene sequence:

>444_bases
ATGAAATTTCGAGTGAAGCTGGATAATAGTGTTGCGGTTGGTGGAGTTGACCTACATTGCCACCCACAAGATATCGAAAA
AGTAACGAATATTGTTTTAAGTTTAGAAGAAAAAATCTCTGTGAAAAAAGACGGGGAAACTTACTTGCTCGAACCGAAAG
TTATTTTGTATTTTGAAGCTGTTGAAAATAAAATTTTTGTTTACACTGAAGAAGAAGTATATGAAACTAATTGGAAATTA
TATGAACTAGAGAAACGATTTGATGAGAGCTCTTTTTTTAGATGCTCCAAATCAATGATTTTAAATATTGAATGGATAGA
AAAAGTTGCGCCTGGTTTTAACGGCAGATTTGAAGCAAGTTTGTTGAACAACGAAAAAGTCATTATTTCTAGACAATATG
CTAAAGTTTTAAAACAAAAATTACAGATTGGAGGGGGAAAATAA

Upstream 100 bases:

>100_bases
AGTTTTTTTGCATCTTAAGGAGGATAAAATGCAAGTTACCAAAATAAGCTTGTAGTTTCACTTAGACTATTTATAATGAA
ATAGAGAGGGAGGTGGCTAA

Downstream 100 bases:

>100_bases
ATGAGAGACAAACTAATTGAGTATATTCAAACTTTTAGCGTCATTTTTACAGGTTCTATTATAACCACAACTTTTTCATA
TATGTTTTCGGGACATGGAG

Product: LytR/AlgR family response regulator

Products: NA

Alternate protein names: Response Regulator Of LytR/AlgR Family; Two-Component Response Regulator; Transcriptional Regulator; Response Regulator; LytR/AlgR Family Response Regulator; Ypothetical Protein SMU.; LytTr Domain Transcriptional Regulator; Two Component Transcriptional Regulator LytTR Family

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MKFRVKLDNSVAVGGVDLHCHPQDIEKVTNIVLSLEEKISVKKDGETYLLEPKVILYFEAVENKIFVYTEEEVYETNWKL
YELEKRFDESSFFRCSKSMILNIEWIEKVAPGFNGRFEASLLNNEKVIISRQYAKVLKQKLQIGGGK

Sequences:

>Translated_147_residues
MKFRVKLDNSVAVGGVDLHCHPQDIEKVTNIVLSLEEKISVKKDGETYLLEPKVILYFEAVENKIFVYTEEEVYETNWKL
YELEKRFDESSFFRCSKSMILNIEWIEKVAPGFNGRFEASLLNNEKVIISRQYAKVLKQKLQIGGGK
>Mature_147_residues
MKFRVKLDNSVAVGGVDLHCHPQDIEKVTNIVLSLEEKISVKKDGETYLLEPKVILYFEAVENKIFVYTEEEVYETNWKL
YELEKRFDESSFFRCSKSMILNIEWIEKVAPGFNGRFEASLLNNEKVIISRQYAKVLKQKLQIGGGK

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17083; Mature: 17083

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFRVKLDNSVAVGGVDLHCHPQDIEKVTNIVLSLEEKISVKKDGETYLLEPKVILYFEA
CEEEEEECCCEEECCEEEEECHHHHHHHHHHHHHHHHHCCEECCCCEEEECCEEEEEEEE
VENKIFVYTEEEVYETNWKLYELEKRFDESSFFRCSKSMILNIEWIEKVAPGFNGRFEAS
CCCEEEEEECHHEECCCCEEEEEHHHCCCCHHHEECHHHEEEEEHHHHHCCCCCCEEEEE
LLNNEKVIISRQYAKVLKQKLQIGGGK
EECCCEEEEEHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKFRVKLDNSVAVGGVDLHCHPQDIEKVTNIVLSLEEKISVKKDGETYLLEPKVILYFEA
CEEEEEECCCEEECCEEEEECHHHHHHHHHHHHHHHHHCCEECCCCEEEECCEEEEEEEE
VENKIFVYTEEEVYETNWKLYELEKRFDESSFFRCSKSMILNIEWIEKVAPGFNGRFEAS
CCCEEEEEECHHEECCCCEEEEEHHHCCCCHHHEECHHHEEEEEHHHHHCCCCCCEEEEE
LLNNEKVIISRQYAKVLKQKLQIGGGK
EECCCEEEEEHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA