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The map label for this gene is ycgR [H]

Identifier: 116872317

GI number: 116872317

Start: 929729

End: 930763

Strand: Direct

Name: ycgR [H]

Synonym: lwe0899

Alternate gene names: 116872317

Gene position: 929729-930763 (Clockwise)

Preceding gene: 116872316

Following gene: 116872318

Centisome position: 33.04

GC content: 37.29

Gene sequence:

>1035_bases
ATGTTTAGTCATCTGCCGGATTCATTCCTACAAATGAATACCATTTTTATTTCCATTTTAATTGAAGCACTGCCATTTGT
ATTGATTGGTGTATTTATCGCTGGCTTTATTCAAATGTTTATTTCTGAAAAATTCATTGCACGAGTCATCCCAAAAAATA
AATTTTTAGCAGTCATTGTTGGCTCGCTTATTGGTGTGTTTTTCCCTTCCTGCGAATGTGGAATTGTTCCTATAGTTCGT
AATTTGCTTGCAAAAGGTGTACCACTCCATGCCGGAATTGCCTTTATGCTCACAGCACCGATTATTAATCCTGTAGTACT
TTTTTCTACTTATGTCGCATTTGGGAGTACCTGGGAAGTGCCGCTATTACGTGTTGCAGGAAGCCTCGTAGTCGCTCTCG
TTGTTGGAAATATTATCGCTTATTTTTATAAAGGAACAGGTTTGAAAGATCGCTTTTTAAAATATGAAGCAGCAAGTGAA
AAAGTGGCCGTTCCAGCTGGAAACCTAGCAATTGCTAATGGTCCAGCAGAAAGCACAACAACTAATTTTCAAGTATTAAG
AACCGAAGAAACTCCAGTTAGACTAGAGCATAATCATGCGCACCATCATGACGCAGAGCATACGCATACAAAAATGACAT
TTAGCCAAAAAGTGTGGCATACCGTTCAACACGCTGTTGACGAATTCTTTTCTGTAGGTAAATACCTTGTTTTTGGTGCT
TTAATTGCTGCAGCGATGCAAACTTACATTAAAACCTCTACGCTCGTATCAATTGGTCACGGTCCGATATTATCTATCTT
ACTGATGATGGTACTTGCCTTTGTATTATCGCTATGTTCTGAAGCAGATGCCTTTATTGGTGCTTCTTTCCGTAGTGTAT
TTTCCACCCAATCAATTGTCGCATTTTTAGTTTTTGGTCCAATGCTTGATATTAAAAATTTAATGATGATGTTAGGTGCA
TTTAAAGCGAAATTTGTCTTATTAATTGTTACTAGTGTAACGATTGTCGTCTTTTTATACGCTTTAGTTATCTAA

Upstream 100 bases:

>100_bases
CAAAATAATAAATATTCTCATTTATCTTTTACTTGATTTCTTTAAAAGATAGGCTTAGAATCAAATAGTTATTAAAAAGA
GCAAAGAAAGAAGGAATCCT

Downstream 100 bases:

>100_bases
CCGAAAGCAGGTGATTACATGTTTCGAGTTTTTATATTATTTGGATTTGGCTTTTATTTAATGCAGCTACATATTTCTGG
TGATATCAGTAAATATATTA

Product: ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEKFIARVIPKNKFLAVIVGSLIGVFFPSCECGIVPIVR
NLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEVPLLRVAGSLVVALVVGNIIAYFYKGTGLKDRFLKYEAASE
KVAVPAGNLAIANGPAESTTTNFQVLRTEETPVRLEHNHAHHHDAEHTHTKMTFSQKVWHTVQHAVDEFFSVGKYLVFGA
LIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQSIVAFLVFGPMLDIKNLMMMLGA
FKAKFVLLIVTSVTIVVFLYALVI

Sequences:

>Translated_344_residues
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEKFIARVIPKNKFLAVIVGSLIGVFFPSCECGIVPIVR
NLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEVPLLRVAGSLVVALVVGNIIAYFYKGTGLKDRFLKYEAASE
KVAVPAGNLAIANGPAESTTTNFQVLRTEETPVRLEHNHAHHHDAEHTHTKMTFSQKVWHTVQHAVDEFFSVGKYLVFGA
LIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQSIVAFLVFGPMLDIKNLMMMLGA
FKAKFVLLIVTSVTIVVFLYALVI
>Mature_344_residues
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEKFIARVIPKNKFLAVIVGSLIGVFFPSCECGIVPIVR
NLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEVPLLRVAGSLVVALVVGNIIAYFYKGTGLKDRFLKYEAASE
KVAVPAGNLAIANGPAESTTTNFQVLRTEETPVRLEHNHAHHHDAEHTHTKMTFSQKVWHTVQHAVDEFFSVGKYLVFGA
LIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQSIVAFLVFGPMLDIKNLMMMLGA
FKAKFVLLIVTSVTIVVFLYALVI

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 37574; Mature: 37574

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEKFIARVIPKNKFLAVIV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GSLIGVFFPSCECGIVPIVRNLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEV
HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
PLLRVAGSLVVALVVGNIIAYFYKGTGLKDRFLKYEAASEKVAVPAGNLAIANGPAESTT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCEEEECCCCCCCC
TNFQVLRTEETPVRLEHNHAHHHDAEHTHTKMTFSQKVWHTVQHAVDEFFSVGKYLVFGA
CCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQSIV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLVFGPMLDIKNLMMMLGAFKAKFVLLIVTSVTIVVFLYALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEKFIARVIPKNKFLAVIV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GSLIGVFFPSCECGIVPIVRNLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEV
HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
PLLRVAGSLVVALVVGNIIAYFYKGTGLKDRFLKYEAASEKVAVPAGNLAIANGPAESTT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCEEEECCCCCCCC
TNFQVLRTEETPVRLEHNHAHHHDAEHTHTKMTFSQKVWHTVQHAVDEFFSVGKYLVFGA
CCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQSIV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFLVFGPMLDIKNLMMMLGAFKAKFVLLIVTSVTIVVFLYALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]