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The map label for this gene is araQ [H]

Identifier: 116872274

GI number: 116872274

Start: 887105

End: 887938

Strand: Direct

Name: araQ [H]

Synonym: lwe0854

Alternate gene names: 116872274

Gene position: 887105-887938 (Clockwise)

Preceding gene: 116872273

Following gene: 116872275

Centisome position: 31.52

GC content: 34.29

Gene sequence:

>834_bases
ATGGTTGGACATAATAGTAAAGCGGGGAAAATTGTTCGCTATATACTGACAACATTACTCATGCTAGTTATGATTTATCC
GTTTATTTATCTTGTCTTAAACTCATTTGCAGCTTGGGATCAAGTAGATAAAAAGCTTATTCCTACTGAATTTACAACTC
GTTCATGGGATTGGCTGTTTGGTAATTCAGTAGTGGCTGCTCCAGCTCCGTGGATTCATGCATTTATTAATACGATTATT
GTTTCTACGATTGCTACAGGATTAATGTTACTTTTTGGCCTAATGGTTGGATATGCACTAGCAAAAGTAGATTTTAAAGG
GAAGAAACTTGTTAATAATGCGATTTTATTCCAAATGTTCTTCCCAGCAATTATTTTGCTTATTCCACAATTTTTAATGA
TTACAGATTTTGGTTTACTCGATACGTATGCTGGAATGATTATTCCAACAATGCTGAGTTTATGGGCAGTCTTTATGTAT
ACAAACTTTTTCAAAGCGATTCCAGATACACTAATTGAAGCAGCCAAATTAGATGGGGCAAGCGATATGAAAATTTTATT
TCGTGTTGTGCTACCAATGTCTAAATCTATTACGACGGTTATTTTCTTGTTCCTATTCACAGACAGATGGACAAATTTAC
TTTGGGACATGCTTGTAACAAAAAGCGATGGAACGGTAACGTTAAATGTACTTATATCGCAAATGTTTGGACCATATGCA
ACTTATCCAGGTCCTATGTATGCGGCTTCTGTATTATTAACGCTTCCGCTTATTATTTTATTCTTATTCTTCTCAAAGAA
ATTCCAAGAAGGAATGCAATTTACTTTGAAATAA

Upstream 100 bases:

>100_bases
AATTCTGGTTATGCTTCTGCAATTTCACTTATGGCCGCAACTGTAACGTTTGCATCGATTGGTGTCATTAAGAAAATGCT
TGAGAAATGGGGTCAAAGAA

Downstream 100 bases:

>100_bases
AAGGAGCGACTGAACTTGGAGTTTTGGCGTGGTAGTGTTTTTTATGAAATTTATATGAAATCATTTCAAGATAGTAATGG
TGATGGTTTGGGTGACTTTG

Product: sugar ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MVGHNSKAGKIVRYILTTLLMLVMIYPFIYLVLNSFAAWDQVDKKLIPTEFTTRSWDWLFGNSVVAAPAPWIHAFINTII
VSTIATGLMLLFGLMVGYALAKVDFKGKKLVNNAILFQMFFPAIILLIPQFLMITDFGLLDTYAGMIIPTMLSLWAVFMY
TNFFKAIPDTLIEAAKLDGASDMKILFRVVLPMSKSITTVIFLFLFTDRWTNLLWDMLVTKSDGTVTLNVLISQMFGPYA
TYPGPMYAASVLLTLPLIILFLFFSKKFQEGMQFTLK

Sequences:

>Translated_277_residues
MVGHNSKAGKIVRYILTTLLMLVMIYPFIYLVLNSFAAWDQVDKKLIPTEFTTRSWDWLFGNSVVAAPAPWIHAFINTII
VSTIATGLMLLFGLMVGYALAKVDFKGKKLVNNAILFQMFFPAIILLIPQFLMITDFGLLDTYAGMIIPTMLSLWAVFMY
TNFFKAIPDTLIEAAKLDGASDMKILFRVVLPMSKSITTVIFLFLFTDRWTNLLWDMLVTKSDGTVTLNVLISQMFGPYA
TYPGPMYAASVLLTLPLIILFLFFSKKFQEGMQFTLK
>Mature_277_residues
MVGHNSKAGKIVRYILTTLLMLVMIYPFIYLVLNSFAAWDQVDKKLIPTEFTTRSWDWLFGNSVVAAPAPWIHAFINTII
VSTIATGLMLLFGLMVGYALAKVDFKGKKLVNNAILFQMFFPAIILLIPQFLMITDFGLLDTYAGMIIPTMLSLWAVFMY
TNFFKAIPDTLIEAAKLDGASDMKILFRVVLPMSKSITTVIFLFLFTDRWTNLLWDMLVTKSDGTVTLNVLISQMFGPYA
TYPGPMYAASVLLTLPLIILFLFFSKKFQEGMQFTLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=278, Percent_Identity=26.978417266187, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1789860, Length=216, Percent_Identity=28.7037037037037, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790464, Length=286, Percent_Identity=26.5734265734266, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31333; Mature: 31333

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]