Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689906
Identifier: 116689906
GI number: 116689906
Start: 2090172
End: 2090759
Strand: Direct
Name: 116689906
Synonym: Bcen2424_1885
Alternate gene names: NA
Gene position: 2090172-2090759 (Clockwise)
Preceding gene: 116689905
Following gene: 116689916
Centisome position: 60.0
GC content: 67.01
Gene sequence:
>588_bases ATGCAAAAACGGAATCTTGTGCTGAAAGCCGCCGCTGCGCTCATCGTCGGTAGCCTCGCGCTCACCGGTTGCACCACCAC GCCGGACAAGCCGGACAACGCCGCGACCAACGCGTCGAAGCGTCAGTCGATCGACGCGAGCGTCGACGCCACGCTGTCTC GCATGTACTCCACCGTCAAGGGTTCGCGCGAGCTCGTCGCGAAATCGCGCGGCGTGCTGGTCTTCCCCGAAGTGCTCCAG GCCGGCTTCATCGTCGGCGGCCAGTCGGGCAACGGCGCGCTGCGCGTCGGCGGCAGCACGGTCGGCTACTACAACACGTC GTCGCTGTCGGTCGGCCTGCAGGCCGGTGCGCAGTCGAAGGCGATCGTGTTCCTGTTCATGACGCAGCAGGCGCTCGACG AATTCCGCGGCTCGGACGGCTGGGCCGCCGGCGCCGGCGCATCGGTCGCACTCGTGAAGATGGGCGCGAACGGCGCGGTC GACTCCAACACGGCCACCGCGCCGATCCAGGTCGTCGTGCTGACCAACGCCGGCCTGATGGGCGACGTATCGATCAACGG CACGAAGGTCACGAAGCTCAAGATCTGA
Upstream 100 bases:
>100_bases CGCCAACGAAAAGAGCCCCTGATCCGCTGTGATATAACTGCCGACGTGATCCGCTCCCTGAGCGAGACTCACTCCGAACA TCATCCGATGGAGAACAACG
Downstream 100 bases:
>100_bases CGTTGACGCACTGCCCGCGCGCGCTGCGCGCGGACCATGCGCAAACGGCGATGTCCTTGCGGGCATCGCCGTTTTTTTAT CCGCCGCCCTTCTGCATCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal
Number of amino acids: Translated: 195; Mature: 195
Protein sequence:
>195_residues MQKRNLVLKAAAALIVGSLALTGCTTTPDKPDNAATNASKRQSIDASVDATLSRMYSTVKGSRELVAKSRGVLVFPEVLQ AGFIVGGQSGNGALRVGGSTVGYYNTSSLSVGLQAGAQSKAIVFLFMTQQALDEFRGSDGWAAGAGASVALVKMGANGAV DSNTATAPIQVVVLTNAGLMGDVSINGTKVTKLKI
Sequences:
>Translated_195_residues MQKRNLVLKAAAALIVGSLALTGCTTTPDKPDNAATNASKRQSIDASVDATLSRMYSTVKGSRELVAKSRGVLVFPEVLQ AGFIVGGQSGNGALRVGGSTVGYYNTSSLSVGLQAGAQSKAIVFLFMTQQALDEFRGSDGWAAGAGASVALVKMGANGAV DSNTATAPIQVVVLTNAGLMGDVSINGTKVTKLKI >Mature_195_residues MQKRNLVLKAAAALIVGSLALTGCTTTPDKPDNAATNASKRQSIDASVDATLSRMYSTVKGSRELVAKSRGVLVFPEVLQ AGFIVGGQSGNGALRVGGSTVGYYNTSSLSVGLQAGAQSKAIVFLFMTQQALDEFRGSDGWAAGAGASVALVKMGANGAV DSNTATAPIQVVVLTNAGLMGDVSINGTKVTKLKI
Specific function: Unknown
COG id: COG2930
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19795; Mature: 19795
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKRNLVLKAAAALIVGSLALTGCTTTPDKPDNAATNASKRQSIDASVDATLSRMYSTVK CCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHC GSRELVAKSRGVLVFPEVLQAGFIVGGQSGNGALRVGGSTVGYYNTSSLSVGLQAGAQSK CCHHHHHHCCCEEEEHHHHHCCEEEECCCCCCEEEECCCEEEEEECCCEEEEEECCCCCC AIVFLFMTQQALDEFRGSDGWAAGAGASVALVKMGANGAVDSNTATAPIQVVVLTNAGLM EEEEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCEE GDVSINGTKVTKLKI EEEEECCEEEEEEEC >Mature Secondary Structure MQKRNLVLKAAAALIVGSLALTGCTTTPDKPDNAATNASKRQSIDASVDATLSRMYSTVK CCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHC GSRELVAKSRGVLVFPEVLQAGFIVGGQSGNGALRVGGSTVGYYNTSSLSVGLQAGAQSK CCHHHHHHCCCEEEEHHHHHCCEEEECCCCCCEEEECCCEEEEEECCCEEEEEECCCCCC AIVFLFMTQQALDEFRGSDGWAAGAGASVALVKMGANGAVDSNTATAPIQVVVLTNAGLM EEEEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCEE GDVSINGTKVTKLKI EEEEECCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA