| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is arnT [H]
Identifier: 116689878
GI number: 116689878
Start: 2062278
End: 2063954
Strand: Direct
Name: arnT [H]
Synonym: Bcen2424_1857
Alternate gene names: 116689878
Gene position: 2062278-2063954 (Clockwise)
Preceding gene: 116689877
Following gene: 116689879
Centisome position: 59.19
GC content: 67.98
Gene sequence:
>1677_bases ATGAACGATACGCCGTCGAGGCTACCGCTCAATCGCATCACGCTCGTCCTCCTGCTCGTCGCGCTCGCGATCGTCTGGTT CGCGCCACTCGGGCTGCGCCACCTGATCCCGAGCGACGAAGGCCGCTACGCGGAAATGGCGCGCGAGATGTTCGTCACCG GCGACTGGATCACGCCGCGCTACAACGGTTACAAGTACTTCGAGAAGCCGCCGCTGCAGACCTGGCTGAACGCGCTGACG TTCGCGTGGTTCGGTATCGGCGAATGGCAGGCGCGCCTCTACACGGCCGTCGCGAGCTTCGCCGGCGTGCTGCTCGTCGG CTACACCGGCGCGCGCCTGTTCAACCCGCTGTCGGGCTTCCTCGCGGCCGTCGTGCTCGCCAGCGCGCCGTACTGGAACC TGATGGGCCACTTCAACGCGCTCGACATGGGGCTCGCGTTCTGGATGGCGCTGTCGCTCTGCTCGCTGCTGCTCGCGCAG CGGCCCGGGCTGCGCCCGGCGGCGGTACGCGGCTGGATGTGGGCGTGCTGGGCCGCGATGGCGTTCGCGGTGCTGTCCAA GGGCCTCGTCGGGCTGATCCTGCCCGGCGCCGTGCTCGTGCTGTATACGCTGATCGCGCGCGACTGGGCGCTGTGGAAGC GCCTGTATCTCGTCAGCGGCCTCGTGATCTTCTTCGCGATCGTCACGCCGTGGTTCGTACTGGTCCAGCAGCGCAACCCC GAGTTCTTCAACTTCTTCTTCGTCGTCCAGCAGTTCCGCCGGTACCTGACCCCGGAACAGAACCGCCCGGGCCCGCTGTA CTACTTCGTGCCCGTGCTGCTGGTCGGCTTCCTGCCGTGGCTGTCGGTCGCGTGGCAGAGCATCCGCCATGCGCTGCGCA TGCCGCGCCAGCCGAACGGCTTCTCGCCGATGCTCGTGCTGCTGATCTGGAGCGCGTTCATCTTCCTGTTTTTCAGCGCG TCGCATTCGAAGCTGATCTCGTACGTGCTGCCGGTCGCGCCGGCGCTCGCGCTGATCATCGGCGCTTACCTGCCGCTGAT GACGGCCGAGCGCTTCCGCCGCCACCTGCTCGGCTACCTCGTGTTCTTCGTCGCCGCGGCGTTCGGGATCATCTTCCTCG CGTACCAGGGCGACGCCCGCACGCCGAACGCGTTGTACCGGGCGTTCCAGATGTGGCTGTACGCCGGCCTCGCGGTCTCG GCCGCGCTGACGCTCGCGGCCGCCTGGCTGAACCGCCGCGCGGGCGTGGCCGCCGCGCTCGCGGCGTTCGGCGCCGCGTG GCTCGCGTTCGGCACGATCGGCGGTACCGGACACGACGAGTTCGGCCGCTACAGCTCGGGCGCGCTGCTCGCACCGGCCG TGCGCGCCGAGCTGGCGAAGCTGCCGCCCGATACGCCGTTCTACTCGATCGAAATGCTCGATCACACGTTCCCGTTCTAC ATGGGCCACACGACGATCATGGTCCAGCGCCAGGACGAGCTCGCGTTCGGGATCTCGGTCGAGCCGAACAAGTGGGTCCC GACCGTCGGCGAATGGATCACGCGCTGGAAGCAGGACACCCATGCGCTCGCGATCATGCCGCCCGGCCAGTACGACGCGC TGGTCAAGGAAGGCGTGCCGATGCGCGTGATCGCGCGCGACAACCGCCGCGTGATCGTCGAGAAACCGCAATCGTAA
Upstream 100 bases:
>100_bases CCGGCGCAGCGGGTCGATCCCCCGATCGGCCCGGCCAGGCCGCCCGCCCCGGCGCTGCCCGCCGGCGGCCCCGTCACAAC AACCAACAGGCTGAAAACCC
Downstream 100 bases:
>100_bases GGACGTCCCCCGCATGAACCCCGTTTCGTTCGTCTGCATCGTCACCGGCGTGATGCTCAACGCCTGTGCGCAACTTCTGC TGAAAGCCGGCGTCAACGCC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 558; Mature: 558
Protein sequence:
>558_residues MNDTPSRLPLNRITLVLLLVALAIVWFAPLGLRHLIPSDEGRYAEMAREMFVTGDWITPRYNGYKYFEKPPLQTWLNALT FAWFGIGEWQARLYTAVASFAGVLLVGYTGARLFNPLSGFLAAVVLASAPYWNLMGHFNALDMGLAFWMALSLCSLLLAQ RPGLRPAAVRGWMWACWAAMAFAVLSKGLVGLILPGAVLVLYTLIARDWALWKRLYLVSGLVIFFAIVTPWFVLVQQRNP EFFNFFFVVQQFRRYLTPEQNRPGPLYYFVPVLLVGFLPWLSVAWQSIRHALRMPRQPNGFSPMLVLLIWSAFIFLFFSA SHSKLISYVLPVAPALALIIGAYLPLMTAERFRRHLLGYLVFFVAAAFGIIFLAYQGDARTPNALYRAFQMWLYAGLAVS AALTLAAAWLNRRAGVAAALAAFGAAWLAFGTIGGTGHDEFGRYSSGALLAPAVRAELAKLPPDTPFYSIEMLDHTFPFY MGHTTIMVQRQDELAFGISVEPNKWVPTVGEWITRWKQDTHALAIMPPGQYDALVKEGVPMRVIARDNRRVIVEKPQS
Sequences:
>Translated_558_residues MNDTPSRLPLNRITLVLLLVALAIVWFAPLGLRHLIPSDEGRYAEMAREMFVTGDWITPRYNGYKYFEKPPLQTWLNALT FAWFGIGEWQARLYTAVASFAGVLLVGYTGARLFNPLSGFLAAVVLASAPYWNLMGHFNALDMGLAFWMALSLCSLLLAQ RPGLRPAAVRGWMWACWAAMAFAVLSKGLVGLILPGAVLVLYTLIARDWALWKRLYLVSGLVIFFAIVTPWFVLVQQRNP EFFNFFFVVQQFRRYLTPEQNRPGPLYYFVPVLLVGFLPWLSVAWQSIRHALRMPRQPNGFSPMLVLLIWSAFIFLFFSA SHSKLISYVLPVAPALALIIGAYLPLMTAERFRRHLLGYLVFFVAAAFGIIFLAYQGDARTPNALYRAFQMWLYAGLAVS AALTLAAAWLNRRAGVAAALAAFGAAWLAFGTIGGTGHDEFGRYSSGALLAPAVRAELAKLPPDTPFYSIEMLDHTFPFY MGHTTIMVQRQDELAFGISVEPNKWVPTVGEWITRWKQDTHALAIMPPGQYDALVKEGVPMRVIARDNRRVIVEKPQS >Mature_558_residues MNDTPSRLPLNRITLVLLLVALAIVWFAPLGLRHLIPSDEGRYAEMAREMFVTGDWITPRYNGYKYFEKPPLQTWLNALT FAWFGIGEWQARLYTAVASFAGVLLVGYTGARLFNPLSGFLAAVVLASAPYWNLMGHFNALDMGLAFWMALSLCSLLLAQ RPGLRPAAVRGWMWACWAAMAFAVLSKGLVGLILPGAVLVLYTLIARDWALWKRLYLVSGLVIFFAIVTPWFVLVQQRNP EFFNFFFVVQQFRRYLTPEQNRPGPLYYFVPVLLVGFLPWLSVAWQSIRHALRMPRQPNGFSPMLVLLIWSAFIFLFFSA SHSKLISYVLPVAPALALIIGAYLPLMTAERFRRHLLGYLVFFVAAAFGIIFLAYQGDARTPNALYRAFQMWLYAGLAVS AALTLAAAWLNRRAGVAAALAAFGAAWLAFGTIGGTGHDEFGRYSSGALLAPAVRAELAKLPPDTPFYSIEMLDHTFPFY MGHTTIMVQRQDELAFGISVEPNKWVPTVGEWITRWKQDTHALAIMPPGQYDALVKEGVPMRVIARDNRRVIVEKPQS
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=332, Percent_Identity=30.421686746988, Blast_Score=142, Evalue=8e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 62618; Mature: 62618
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDTPSRLPLNRITLVLLLVALAIVWFAPLGLRHLIPSDEGRYAEMAREMFVTGDWITPR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC YNGYKYFEKPPLQTWLNALTFAWFGIGEWQARLYTAVASFAGVLLVGYTGARLFNPLSGF CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LAAVVLASAPYWNLMGHFNALDMGLAFWMALSLCSLLLAQRPGLRPAAVRGWMWACWAAM HHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH AFAVLSKGLVGLILPGAVLVLYTLIARDWALWKRLYLVSGLVIFFAIVTPWFVLVQQRNP HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EFFNFFFVVQQFRRYLTPEQNRPGPLYYFVPVLLVGFLPWLSVAWQSIRHALRMPRQPNG HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC FSPMLVLLIWSAFIFLFFSASHSKLISYVLPVAPALALIIGAYLPLMTAERFRRHLLGYL CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFFVAAAFGIIFLAYQGDARTPNALYRAFQMWLYAGLAVSAALTLAAAWLNRRAGVAAAL HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAFGAAWLAFGTIGGTGHDEFGRYSSGALLAPAVRAELAKLPPDTPFYSIEMLDHTFPFY HHHHHHHHHHHCCCCCCCHHCCCCCCCCEEHHHHHHHHHHCCCCCCCEEEEHHHCCCCHH MGHTTIMVQRQDELAFGISVEPNKWVPTVGEWITRWKQDTHALAIMPPGQYDALVKEGVP CCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCC MRVIARDNRRVIVEKPQS EEEEECCCCEEEEECCCC >Mature Secondary Structure MNDTPSRLPLNRITLVLLLVALAIVWFAPLGLRHLIPSDEGRYAEMAREMFVTGDWITPR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCC YNGYKYFEKPPLQTWLNALTFAWFGIGEWQARLYTAVASFAGVLLVGYTGARLFNPLSGF CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LAAVVLASAPYWNLMGHFNALDMGLAFWMALSLCSLLLAQRPGLRPAAVRGWMWACWAAM HHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH AFAVLSKGLVGLILPGAVLVLYTLIARDWALWKRLYLVSGLVIFFAIVTPWFVLVQQRNP HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EFFNFFFVVQQFRRYLTPEQNRPGPLYYFVPVLLVGFLPWLSVAWQSIRHALRMPRQPNG HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC FSPMLVLLIWSAFIFLFFSASHSKLISYVLPVAPALALIIGAYLPLMTAERFRRHLLGYL CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFFVAAAFGIIFLAYQGDARTPNALYRAFQMWLYAGLAVSAALTLAAAWLNRRAGVAAAL HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAFGAAWLAFGTIGGTGHDEFGRYSSGALLAPAVRAELAKLPPDTPFYSIEMLDHTFPFY HHHHHHHHHHHCCCCCCCHHCCCCCCCCEEHHHHHHHHHHCCCCCCCEEEEHHHCCCCHH MGHTTIMVQRQDELAFGISVEPNKWVPTVGEWITRWKQDTHALAIMPPGQYDALVKEGVP CCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCC MRVIARDNRRVIVEKPQS EEEEECCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA