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The map label for this gene is nlpD [C]

Identifier: 116689842

GI number: 116689842

Start: 2023271

End: 2024161

Strand: Reverse

Name: nlpD [C]

Synonym: Bcen2424_1821

Alternate gene names: 116689842

Gene position: 2024161-2023271 (Counterclockwise)

Preceding gene: 116689843

Following gene: 116689841

Centisome position: 58.1

GC content: 68.13

Gene sequence:

>891_bases
ATGAGTATGTTGCGCGCGATGCAAAACAACCGATCCAGGGAACCGCTCACGTTCGCCCAGCGCGCGATCTGTGTGGCTGC
GTTCTCCACGCTACTGGCCGCCTGTGCGACGCGGCTCGACAACGCGCCCGTCGTCGACCGCTCCGGGTCGCTCGGCACGA
CTGCCGCCGCGCAGCCCGCGGTGCCGCTCGGTCCGCCGCCGCCGGGCTTCTATCGTGTGAAGCCGGGTGACACGCTGTAC
CGGATTGCGCTCGAGAACGGGCAGAACTATCGCGACATCGCGACGTGGAACAATCTGGCGAACCCGAACCAGATCGAAGT
CGACCAGCTGCTGCGCGTGGCGCCGCCGGGCGGCGCTGCAGTGGCGGGCACGCCGGCCGCCGCGCCGATCGTCGGTGGTG
CGGTCGCGACCGCGCCGCTGAGCAGCGGTCCGGCCGCGCCGGCCGCCGGCACGTCGTCGGCGCTCGCCGCCACGCCCCCG
GCCGCGGCGACCGGATCGAGCGATACGGCGGCGGCGCCGAGCGGCCCCGTGACGTTCGCGTGGCCCGCGCGCGGCCCCGT
GCTGAACGGGTTCGACGATGCGAAGAACAAGGGTGTCAATATCGGCGGGACGGCCGGCGAGGCCGTGAAGGCGGCGGCGG
ACGGCCGCGTCGTTTACTCCGGCAACGGTCTGCGTGGTTACGGCAACCTCATTATCATCAAACACGATGCAACTTACCTC
ACGGCGTATGCACACAATCGCGCTTTGATGGTAAAAGAGGGGGACGCGGTAACGAAGGGGCAGAAGATCGCCGAGATGGG
TAACAGCGATGCCGACCGCGTGATGCTGCATTTCGAGGTTCGCCGGCAGGGTAAGCCTGTCGATCCGCTGAAGTATTTGC
CGCCTCAATAA

Upstream 100 bases:

>100_bases
TGCTCACGCTCGTCGAGCGCGTCGCGCACGCGCAATGGCGAGAGTCCCGGCTTGATCGCGTTTTCTTTGTCCCTTTAAAA
TCCGGAGTGATTTGAAACCG

Downstream 100 bases:

>100_bases
CCGAGACGACCATGCCGAAATCGAAGCGCCACGAGCCGCAAGCCGAGTCTGAGAAGATCAGTCGTGCCACGCAAGCATCG
GTGGGGCGAGTGGGTGCTTC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSMLRAMQNNRSREPLTFAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTAAAQPAVPLGPPPPGFYRVKPGDTLY
RIALENGQNYRDIATWNNLANPNQIEVDQLLRVAPPGGAAVAGTPAAAPIVGGAVATAPLSSGPAAPAAGTSSALAATPP
AAATGSSDTAAAPSGPVTFAWPARGPVLNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYL
TAYAHNRALMVKEGDAVTKGQKIAEMGNSDADRVMLHFEVRRQGKPVDPLKYLPPQ

Sequences:

>Translated_296_residues
MSMLRAMQNNRSREPLTFAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTAAAQPAVPLGPPPPGFYRVKPGDTLY
RIALENGQNYRDIATWNNLANPNQIEVDQLLRVAPPGGAAVAGTPAAAPIVGGAVATAPLSSGPAAPAAGTSSALAATPP
AAATGSSDTAAAPSGPVTFAWPARGPVLNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYL
TAYAHNRALMVKEGDAVTKGQKIAEMGNSDADRVMLHFEVRRQGKPVDPLKYLPPQ
>Mature_295_residues
SMLRAMQNNRSREPLTFAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTAAAQPAVPLGPPPPGFYRVKPGDTLYR
IALENGQNYRDIATWNNLANPNQIEVDQLLRVAPPGGAAVAGTPAAAPIVGGAVATAPLSSGPAAPAAGTSSALAATPPA
AATGSSDTAAAPSGPVTFAWPARGPVLNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYLT
AYAHNRALMVKEGDAVTKGQKIAEMGNSDADRVMLHFEVRRQGKPVDPLKYLPPQ

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=274, Percent_Identity=36.8613138686131, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI87082174, Length=229, Percent_Identity=40.6113537117904, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=38.655462184874, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 30329; Mature: 30197

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMLRAMQNNRSREPLTFAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTAAAQPA
CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC
VPLGPPPPGFYRVKPGDTLYRIALENGQNYRDIATWNNLANPNQIEVDQLLRVAPPGGAA
CCCCCCCCCCEEECCCCEEEEEEECCCCCCCCHHHHCCCCCCCEECHHHHHEECCCCCCE
VAGTPAAAPIVGGAVATAPLSSGPAAPAAGTSSALAATPPAAATGSSDTAAAPSGPVTFA
ECCCCCCCHHHCCHHEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEE
WPARGPVLNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYL
CCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEECCEEE
TAYAHNRALMVKEGDAVTKGQKIAEMGNSDADRVMLHFEVRRQGKPVDPLKYLPPQ
EEEECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SMLRAMQNNRSREPLTFAQRAICVAAFSTLLAACATRLDNAPVVDRSGSLGTTAAAQPA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCC
VPLGPPPPGFYRVKPGDTLYRIALENGQNYRDIATWNNLANPNQIEVDQLLRVAPPGGAA
CCCCCCCCCCEEECCCCEEEEEEECCCCCCCCHHHHCCCCCCCEECHHHHHEECCCCCCE
VAGTPAAAPIVGGAVATAPLSSGPAAPAAGTSSALAATPPAAATGSSDTAAAPSGPVTFA
ECCCCCCCHHHCCHHEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEE
WPARGPVLNGFDDAKNKGVNIGGTAGEAVKAAADGRVVYSGNGLRGYGNLIIIKHDATYL
CCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCEEEEEECCEEE
TAYAHNRALMVKEGDAVTKGQKIAEMGNSDADRVMLHFEVRRQGKPVDPLKYLPPQ
EEEECCEEEEEECCCCHHCCHHHHHCCCCCCCEEEEEEEEHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]