Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is serB [C]
Identifier: 116689799
GI number: 116689799
Start: 1976047
End: 1976997
Strand: Direct
Name: serB [C]
Synonym: Bcen2424_1778
Alternate gene names: 116689799
Gene position: 1976047-1976997 (Clockwise)
Preceding gene: 116689798
Following gene: 116689804
Centisome position: 56.72
GC content: 67.3
Gene sequence:
>951_bases ATGGCGCGTTCGCGACGCAACGGCCCGCAGCCGCACGGGGCCCGCGTTCGCAGGCGGCCGCCCGCGGGCCGAGCACGTCA TTCATTCGCCTCCCAACCACTCGTCATGACCCACAATCTCGTCATCCAGAGTCTTGCGCCGCTGTCGGACGCCCATCACA AACCGCTGCTCGCGCTGTCGCGCGGCACCCGCGTCGTGCAGACCGACGATCACGCGCTGCGGATCGAAAACGCGAGCCCG GCGCAGCGCCTCGACATCGACGCATACTGCGGCACGCATGCGCTCGATTTCGGCTTCGTCGAGGCCGGCCTCACGCTCGG CGATTTCGGGCTCGCTGTGATGGACATGGATTCGACGCTGATCACGATCGAGTGCATCGACGAGATCGCCGATTTCTGCG GATTGAAAACGCAGGTCGCGGAGATCACCGAAGCGTCGATGCGCGGCGAGATCCGCGATTTCAACGAAAGCCTGACGCGC CGCGTCGCGCTGCTGGCCGGGCTCGACGCGCACGCGCTCGAGCGCGTGTACGAAGAACGGCTGCAACTGTCGCCAGGCGC CGAGACGATGCTGGCGGGCGTAAAGGCCGCCGGCATGAAGACGCTGCTCGTGTCGGGCGGCTTCACGTTCTTCACCGAGC GGCTGAAAGCCCGCCTCGGCCTCGACTACGCGCATGCGAACACGCTCGAGATCGTCGACGGCAAGCTCACCGGCAAGGTG CTCGGCGAGATCGTCAACGCCGACGTAAAGGCGCGCCTGCTGCGCGAGACGTGCGCTTCGCTCGGCCTCGAACCGCGCCG CGCGATCGCGATGGGCGACGGCTCGAACGACCTGAAGATGATGGCCGAAGCCGGGCTGTCGGTCGCGTTCCACGCGAAGC CCGTCGTGCGCGATGCGGCCACCGTCGCGTTCGACCATGTCGGCCTCGACGGGCTGCTGCGACTGTTCTGA
Upstream 100 bases:
>100_bases CGGCGATCCGCCGTACTGGGATCGTGCAAACGGCTGACCACTACCGCCGCGCGCCCGGTTTCGCGCCGGCGCCGGCGCCC TGCGCGGCCAACCGGCTACA
Downstream 100 bases:
>100_bases TCCTGCGGCACCCTCAATGAAAAACGCCGGCGCGATATCGCATCGCGCCGGCGTTTTGCTTTTGTGCCGGACGTTGCCGG CCCGCGATCAGCCCAGCGCG
Product: phosphoserine phosphatase SerB
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MARSRRNGPQPHGARVRRRPPAGRARHSFASQPLVMTHNLVIQSLAPLSDAHHKPLLALSRGTRVVQTDDHALRIENASP AQRLDIDAYCGTHALDFGFVEAGLTLGDFGLAVMDMDSTLITIECIDEIADFCGLKTQVAEITEASMRGEIRDFNESLTR RVALLAGLDAHALERVYEERLQLSPGAETMLAGVKAAGMKTLLVSGGFTFFTERLKARLGLDYAHANTLEIVDGKLTGKV LGEIVNADVKARLLRETCASLGLEPRRAIAMGDGSNDLKMMAEAGLSVAFHAKPVVRDAATVAFDHVGLDGLLRLF
Sequences:
>Translated_316_residues MARSRRNGPQPHGARVRRRPPAGRARHSFASQPLVMTHNLVIQSLAPLSDAHHKPLLALSRGTRVVQTDDHALRIENASP AQRLDIDAYCGTHALDFGFVEAGLTLGDFGLAVMDMDSTLITIECIDEIADFCGLKTQVAEITEASMRGEIRDFNESLTR RVALLAGLDAHALERVYEERLQLSPGAETMLAGVKAAGMKTLLVSGGFTFFTERLKARLGLDYAHANTLEIVDGKLTGKV LGEIVNADVKARLLRETCASLGLEPRRAIAMGDGSNDLKMMAEAGLSVAFHAKPVVRDAATVAFDHVGLDGLLRLF >Mature_315_residues ARSRRNGPQPHGARVRRRPPAGRARHSFASQPLVMTHNLVIQSLAPLSDAHHKPLLALSRGTRVVQTDDHALRIENASPA QRLDIDAYCGTHALDFGFVEAGLTLGDFGLAVMDMDSTLITIECIDEIADFCGLKTQVAEITEASMRGEIRDFNESLTRR VALLAGLDAHALERVYEERLQLSPGAETMLAGVKAAGMKTLLVSGGFTFFTERLKARLGLDYAHANTLEIVDGKLTGKVL GEIVNADVKARLLRETCASLGLEPRRAIAMGDGSNDLKMMAEAGLSVAFHAKPVVRDAATVAFDHVGLDGLLRLF
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=184, Percent_Identity=27.1739130434783, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1790849, Length=204, Percent_Identity=48.5294117647059, Blast_Score=178, Evalue=5e-46, Organism=Saccharomyces cerevisiae, GI6321647, Length=207, Percent_Identity=40.0966183574879, Blast_Score=142, Evalue=6e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 34171; Mature: 34040
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARSRRNGPQPHGARVRRRPPAGRARHSFASQPLVMTHNLVIQSLAPLSDAHHKPLLALS CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEC RGTRVVQTDDHALRIENASPAQRLDIDAYCGTHALDFGFVEAGLTLGDFGLAVMDMDSTL CCCEEEEECCCEEEECCCCCHHHCCCHHHCCCHHHHHHHHHCCCEECCCCEEEEECCCCE ITIECIDEIADFCGLKTQVAEITEASMRGEIRDFNESLTRRVALLAGLDAHALERVYEER EEHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LQLSPGAETMLAGVKAAGMKTLLVSGGFTFFTERLKARLGLDYAHANTLEIVDGKLTGKV HCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCHHCCCEEEEECCCHHHHH LGEIVNADVKARLLRETCASLGLEPRRAIAMGDGSNDLKMMAEAGLSVAFHAKPVVRDAA HHHHHCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHCCCEEEEECCHHHHHHH TVAFDHVGLDGLLRLF HHHHHHCCHHHHHHCC >Mature Secondary Structure ARSRRNGPQPHGARVRRRPPAGRARHSFASQPLVMTHNLVIQSLAPLSDAHHKPLLALS CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEC RGTRVVQTDDHALRIENASPAQRLDIDAYCGTHALDFGFVEAGLTLGDFGLAVMDMDSTL CCCEEEEECCCEEEECCCCCHHHCCCHHHCCCHHHHHHHHHCCCEECCCCEEEEECCCCE ITIECIDEIADFCGLKTQVAEITEASMRGEIRDFNESLTRRVALLAGLDAHALERVYEER EEHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LQLSPGAETMLAGVKAAGMKTLLVSGGFTFFTERLKARLGLDYAHANTLEIVDGKLTGKV HCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCHHCCCEEEEECCCHHHHH LGEIVNADVKARLLRETCASLGLEPRRAIAMGDGSNDLKMMAEAGLSVAFHAKPVVRDAA HHHHHCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHCCCEEEEECCHHHHHHH TVAFDHVGLDGLLRLF HHHHHHCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]