Click here to switch to the map view.

The map label for this gene is amyD [H]

Identifier: 116689708

GI number: 116689708

Start: 1875149

End: 1876027

Strand: Direct

Name: amyD [H]

Synonym: Bcen2424_1686

Alternate gene names: 116689708

Gene position: 1875149-1876027 (Clockwise)

Preceding gene: 116689707

Following gene: 116689709

Centisome position: 53.82

GC content: 68.03

Gene sequence:

>879_bases
ATGAGCACGCTCGCGACCGGCGGCGCGCCGCGCGACGCGAAAGCCTGGCTCGTCACGCCGGCGCTCTCGTTCATCGCCGC
GCTGTTCATCTATCCGTTCGCATACGGCCTCGTGCTGTCGTTCCAGCCGACGAACGCGACGAACGGCGGCGCGCTCGCGA
ACTACGTGCAGTTCTTCACCGACACCGCGATGTGGCCGACCGTGCTCGTCACGCTGAAGCTCGCGGTGCCGGCGACGCTG
CTCAACGTCGGCATCGCGGTGCCGGTCGCGTTCGCGCTGCGCCGCAACTCGCCGTACCAGAAGTTCGTCACGACGCTGCT
CGTGATTCCGGTCACGCTCGGCACGGTGCTCGTCGCCGACGGGATGCTCACGTATTTCGGGCCGAACGGCTGGTTTCCGC
AGGCGCTGCAGGGGCTGCACCTGTACACCGACGAAGTCCGCCTCACGCACAACTACTGGGGCGTGCTGCTGTCGCTGGTC
GTGTCGGGTTTTCCGTTCGCGTTCCTGCTGATGCTGTCGTACATCAGCGGCATCGACCCGACCCTCGCGCGCGCGGCCGC
CACCCTCGGCGCGAACCCGTGGCAGCAGTTCCGGCAGATCTATCTGCCGCTGCTCGTGCCGGGGCTCACGATGGCCGCGT
GCCTGTCGTTCGTGCAGGCGTTCTCGGTGTTTCCGTCGGCCGTGCTGCTCGGCGCGCCGGCTGGCCCGACCCGCGTGATC
TCGATCGCGGCGGCCGAAGCCGCGTTCGAAAGCTACGACTATTCGCTCGCGTCGGCGATCGCGATCGTGATGGGCTTCGT
GCAGTTGCTGGTGGTCGCGTCGATGCTCGGCGCGCGCCGCTTCTTCTATACCGGCGCGGTGACGGGAGGCAAGGGCTGA

Upstream 100 bases:

>100_bases
CTACGCGTGGCGCCGGCGCGCACGCTCGTCTATGCGGGAGACGGGCAATGAACGGCCCGCGCCACCCGGCGCGCGCGGCG
GCATCCCGCCCGGAGGCCGC

Downstream 100 bases:

>100_bases
TGGCGACCGACGATCATGCCGCCCGCACGTGGCCGCCGAAGCACGACGCACCCGATGCGCGGCCCGTCGATGCAAGGAAA
CCGCACCGGATGAAAAGCAA

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSTLATGGAPRDAKAWLVTPALSFIAALFIYPFAYGLVLSFQPTNATNGGALANYVQFFTDTAMWPTVLVTLKLAVPATL
LNVGIAVPVAFALRRNSPYQKFVTTLLVIPVTLGTVLVADGMLTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLV
VSGFPFAFLLMLSYISGIDPTLARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVI
SIAAAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGAVTGGKG

Sequences:

>Translated_292_residues
MSTLATGGAPRDAKAWLVTPALSFIAALFIYPFAYGLVLSFQPTNATNGGALANYVQFFTDTAMWPTVLVTLKLAVPATL
LNVGIAVPVAFALRRNSPYQKFVTTLLVIPVTLGTVLVADGMLTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLV
VSGFPFAFLLMLSYISGIDPTLARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVI
SIAAAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGAVTGGKG
>Mature_291_residues
STLATGGAPRDAKAWLVTPALSFIAALFIYPFAYGLVLSFQPTNATNGGALANYVQFFTDTAMWPTVLVTLKLAVPATLL
NVGIAVPVAFALRRNSPYQKFVTTLLVIPVTLGTVLVADGMLTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLVV
SGFPFAFLLMLSYISGIDPTLARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVIS
IAAAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGAVTGGKG

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788764, Length=214, Percent_Identity=27.1028037383178, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787080, Length=225, Percent_Identity=27.5555555555556, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31063; Mature: 30932

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLATGGAPRDAKAWLVTPALSFIAALFIYPFAYGLVLSFQPTNATNGGALANYVQFFT
CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHH
DTAMWPTVLVTLKLAVPATLLNVGIAVPVAFALRRNSPYQKFVTTLLVIPVTLGTVLVAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GMLTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLVVSGFPFAFLLMLSYISGIDP
CHHEEECCCCCCHHHHCCHHHHHHHEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCH
TLARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHEE
SIAAAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGAVTGGKG
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
>Mature Secondary Structure 
STLATGGAPRDAKAWLVTPALSFIAALFIYPFAYGLVLSFQPTNATNGGALANYVQFFT
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHH
DTAMWPTVLVTLKLAVPATLLNVGIAVPVAFALRRNSPYQKFVTTLLVIPVTLGTVLVAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GMLTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLVVSGFPFAFLLMLSYISGIDP
CHHEEECCCCCCHHHHCCHHHHHHHEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCH
TLARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVI
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHEE
SIAAAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGAVTGGKG
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]

Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]