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The map label for this gene is pecS [H]

Identifier: 116689702

GI number: 116689702

Start: 1867705

End: 1868235

Strand: Direct

Name: pecS [H]

Synonym: Bcen2424_1680

Alternate gene names: 116689702

Gene position: 1867705-1868235 (Clockwise)

Preceding gene: 116689700

Following gene: 116689703

Centisome position: 53.61

GC content: 68.55

Gene sequence:

>531_bases
ATGGATCGAGCCGAACATGCGCTCGCGCAATGGCGCGCCGAGCGTCCGGATCTCGACGCAACGTCGATGGTGGTGATGGG
ACGGTTGCAGGAAGCCGCGCTCGTGATCGCGCGCGACCGTCTCAATCCGCTGTTCGCGCGCTACGGCATGCAGCCGGGCG
AATTCGACGTGCTCGCGACGCTGCGGCGCAGCGGTGCGCCATACGCGCTGACGCCGACCGCGCTGTACGACGCGCTGCTG
ATGTCGTCGGGCGGGATGACCGCGCGCATCGACCGGCTGCAGAAGGCGGGGTGGGTCGAGCGGCGGCCGAATCCGGCCGA
CGGGCGCGGCACGCTCGTCGCGCTGACCGATGCCGGGCGGGCACTGATCGATGAGGCGGTTGTTGCGCATATCGATAATC
AGCGCGAGGTGCTGGCTGCGTTGTCGGCGGCGGAACAGGCGCAGTTGTCGGAACTGCTGGGGAAGTTGCTGGCGGGGTTG
GGAGGTGGGGCGCCGGAAGGGGAGGAAGGGAAGTCGCTGAAGAATGCGTGA

Upstream 100 bases:

>100_bases
CCAGCGAGGCGCCGCGCGTTTTTCAGGTAAAGTATCTCGACATCAAGATAAATGTTGATTTGTCTCGACGTCAAGATAAC
TGGTAGGCCGAGGAGGGTTA

Downstream 100 bases:

>100_bases
TGCAGACAGACGCGGCGGGCAAAAGAGTTCTTCGTGAATTTTCGCGGGCGTTGCTTGCCGACCCACATCCGCCTTCGACA
CTTATCAACCTCTGCGACAG

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MDRAEHALAQWRAERPDLDATSMVVMGRLQEAALVIARDRLNPLFARYGMQPGEFDVLATLRRSGAPYALTPTALYDALL
MSSGGMTARIDRLQKAGWVERRPNPADGRGTLVALTDAGRALIDEAVVAHIDNQREVLAALSAAEQAQLSELLGKLLAGL
GGGAPEGEEGKSLKNA

Sequences:

>Translated_176_residues
MDRAEHALAQWRAERPDLDATSMVVMGRLQEAALVIARDRLNPLFARYGMQPGEFDVLATLRRSGAPYALTPTALYDALL
MSSGGMTARIDRLQKAGWVERRPNPADGRGTLVALTDAGRALIDEAVVAHIDNQREVLAALSAAEQAQLSELLGKLLAGL
GGGAPEGEEGKSLKNA
>Mature_176_residues
MDRAEHALAQWRAERPDLDATSMVVMGRLQEAALVIARDRLNPLFARYGMQPGEFDVLATLRRSGAPYALTPTALYDALL
MSSGGMTARIDRLQKAGWVERRPNPADGRGTLVALTDAGRALIDEAVVAHIDNQREVLAALSAAEQAQLSELLGKLLAGL
GGGAPEGEEGKSLKNA

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081927, Length=123, Percent_Identity=37.3983739837398, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18787; Mature: 18787

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRAEHALAQWRAERPDLDATSMVVMGRLQEAALVIARDRLNPLFARYGMQPGEFDVLAT
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHH
LRRSGAPYALTPTALYDALLMSSGGMTARIDRLQKAGWVERRPNPADGRGTLVALTDAGR
HHHCCCCCEECHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCH
ALIDEAVVAHIDNQREVLAALSAAEQAQLSELLGKLLAGLGGGAPEGEEGKSLKNA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDRAEHALAQWRAERPDLDATSMVVMGRLQEAALVIARDRLNPLFARYGMQPGEFDVLAT
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCHHHHHH
LRRSGAPYALTPTALYDALLMSSGGMTARIDRLQKAGWVERRPNPADGRGTLVALTDAGR
HHHCCCCCEECHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCH
ALIDEAVVAHIDNQREVLAALSAAEQAQLSELLGKLLAGLGGGAPEGEEGKSLKNA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]