Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116689603
Identifier: 116689603
GI number: 116689603
Start: 1743538
End: 1743786
Strand: Direct
Name: 116689603
Synonym: Bcen2424_1581
Alternate gene names: NA
Gene position: 1743538-1743786 (Clockwise)
Preceding gene: 116689602
Following gene: 116689604
Centisome position: 50.05
GC content: 69.88
Gene sequence:
>249_bases ATGACTCTCTCCAGATTCGCCATCGCCCCGCGGGCATTCGCGCTCTGTCTGGCGCTCGGCGCCTGCCAGACCGCGTCCGG GCCATCGCCCGTGCAACCGTCCCCCGAGACCGCGTCGGCGACCGTTCCCGCCTCGTCGCCGCCGGCCGCGCCGATTCGCG GCATGGGCCTCGCGCCTCGTCTGGCAGGGCAGAGCCACTGGGCCATCGGTCAATGCACGACCAACGGTACCGTCAAGGTA TGCAATTGA
Upstream 100 bases:
>100_bases GAGCTCGACATCGATGCAACGAGCGAGTCGCGCACGCTGCGCGATCTGCCGCAAATCTGACTGCGGGCCGTTACTCAAAA CGAATCGCGCGAGCGTACCC
Downstream 100 bases:
>100_bases CCGACGTCGGCGCAATGGCGCGTGATTCGCGCAAACGGGATCGGAATCCCGGCGTGCCGCCCGCGCCGATGGGCCGGCGG CCGTCGACACGAGCCAGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 82; Mature: 81
Protein sequence:
>82_residues MTLSRFAIAPRAFALCLALGACQTASGPSPVQPSPETASATVPASSPPAAPIRGMGLAPRLAGQSHWAIGQCTTNGTVKV CN
Sequences:
>Translated_82_residues MTLSRFAIAPRAFALCLALGACQTASGPSPVQPSPETASATVPASSPPAAPIRGMGLAPRLAGQSHWAIGQCTTNGTVKV CN >Mature_81_residues TLSRFAIAPRAFALCLALGACQTASGPSPVQPSPETASATVPASSPPAAPIRGMGLAPRLAGQSHWAIGQCTTNGTVKVC N
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8190; Mature: 8058
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLSRFAIAPRAFALCLALGACQTASGPSPVQPSPETASATVPASSPPAAPIRGMGLAPR CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC LAGQSHWAIGQCTTNGTVKVCN CCCCCCCEEEEECCCCEEEECC >Mature Secondary Structure TLSRFAIAPRAFALCLALGACQTASGPSPVQPSPETASATVPASSPPAAPIRGMGLAPR CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC LAGQSHWAIGQCTTNGTVKVCN CCCCCCCEEEEECCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA