Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is scrK [H]
Identifier: 116689562
GI number: 116689562
Start: 1702843
End: 1703781
Strand: Reverse
Name: scrK [H]
Synonym: Bcen2424_1540
Alternate gene names: 116689562
Gene position: 1703781-1702843 (Counterclockwise)
Preceding gene: 116689563
Following gene: 116689558
Centisome position: 48.9
GC content: 70.61
Gene sequence:
>939_bases ATGACGACGACGTTTCCCCGCCTGATCGTGTTCGGCGAAGCGCTGACCGATTTCATCCGCGACGACGCGCAGCACTGGCA CAGCGTCGCCGGCGGCTCGTGCTGGAACGTCGCGCGCGTCGGCGCGCGACTCGGCGTGCCGACGGCCTTCGCCGGCACGG TCAGCCGCGACCCCTTCGGCGACGAGCTGATGCGCAAGAGCGCCGACGCGGGGCTCGACATGCGTTTCATCCGGCAGGTC GACCGCGCACCGCTGCTCGCGATGGTCGTCTCGAAGCAGCCGCCCCACTATTTCTTCATCGGCGAAAACAGCGCCGATCT CGCGTTCGATCCGGCCGATTTGCCGGTCGGCGCGTTCGACGCGGCCGACATCGTGCACGTCGGCTCGCTCGGCGTCGTGC GCGAGCCGCTCGCGTCGCGCCTGATCGAACTCGCGCAGGCCGCACGGGCGGCCGGCAAGCGGATCTCGTTCGATCCGAAC TTCCGTGCGCCGATGGCCGCGCCGTCGTATCGCGACACGCTGCGCCGGCTGACCGCGCTCGCCGACTGGATCAAGGTATC CGACGAGGATCTGCGCGGGCTGTTTCCCGAACTCGACGAAGCGGCCGCACTCGCGCAGTTGCGTGCATGGGCGCCCGACG CGACGATGCTCGTCACGCGCGGCGCGGCCGGCATGCAGCTGCTGCATCGCGATACCGTGCTGTTCCAGCCGGCGCTCCCG GCCGAGGTGGCCGACACGGTCGGCTGCGGCGATGCGAGCATCGGCGGCTGGCTCGCGAGCCAGCTCGCCCGCCCCGAGGC ATCGGCCGCCGAGCATCTGCGCTACGCGGCCGCGTGCGCGGCCGTCGCTTGTGAACATGCAGGCGCCTATGCGCCGACGG CTGCGGAAGTAGCCGACATGATCGAACGCACCACCGCCAACGCCGCGCTGTCGCAATAG
Upstream 100 bases:
>100_bases GGGCCGCGCCGCCACGCGCGACGCCCCGCACCGCCCGGCTGTTCAGATTCAGATCAACCGCTGTACGGCCGCGCGCGATG CCGCGGCGCAAGGTTTCCAC
Downstream 100 bases:
>100_bases GCGGCGCCGACGCGCCGCGCCGTCACTCGCTGCCGTCCGGCGGTTTGCCGGCCTGCAGCAGTTGCAGACTCTCGTCGACG CTGAGCTCCGACATCGCGTC
Product: ribokinase-like domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MTTTFPRLIVFGEALTDFIRDDAQHWHSVAGGSCWNVARVGARLGVPTAFAGTVSRDPFGDELMRKSADAGLDMRFIRQV DRAPLLAMVVSKQPPHYFFIGENSADLAFDPADLPVGAFDAADIVHVGSLGVVREPLASRLIELAQAARAAGKRISFDPN FRAPMAAPSYRDTLRRLTALADWIKVSDEDLRGLFPELDEAAALAQLRAWAPDATMLVTRGAAGMQLLHRDTVLFQPALP AEVADTVGCGDASIGGWLASQLARPEASAAEHLRYAAACAAVACEHAGAYAPTAAEVADMIERTTANAALSQ
Sequences:
>Translated_312_residues MTTTFPRLIVFGEALTDFIRDDAQHWHSVAGGSCWNVARVGARLGVPTAFAGTVSRDPFGDELMRKSADAGLDMRFIRQV DRAPLLAMVVSKQPPHYFFIGENSADLAFDPADLPVGAFDAADIVHVGSLGVVREPLASRLIELAQAARAAGKRISFDPN FRAPMAAPSYRDTLRRLTALADWIKVSDEDLRGLFPELDEAAALAQLRAWAPDATMLVTRGAAGMQLLHRDTVLFQPALP AEVADTVGCGDASIGGWLASQLARPEASAAEHLRYAAACAAVACEHAGAYAPTAAEVADMIERTTANAALSQ >Mature_311_residues TTTFPRLIVFGEALTDFIRDDAQHWHSVAGGSCWNVARVGARLGVPTAFAGTVSRDPFGDELMRKSADAGLDMRFIRQVD RAPLLAMVVSKQPPHYFFIGENSADLAFDPADLPVGAFDAADIVHVGSLGVVREPLASRLIELAQAARAAGKRISFDPNF RAPMAAPSYRDTLRRLTALADWIKVSDEDLRGLFPELDEAAALAQLRAWAPDATMLVTRGAAGMQLLHRDTVLFQPALPA EVADTVGCGDASIGGWLASQLARPEASAAEHLRYAAACAAVACEHAGAYAPTAAEVADMIERTTANAALSQ
Specific function: Unknown
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the carbohydrate kinase pfkB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011611 - InterPro: IPR002173 - InterPro: IPR002139 [H]
Pfam domain/function: PF00294 PfkB [H]
EC number: =2.7.1.4 [H]
Molecular weight: Translated: 33238; Mature: 33107
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTFPRLIVFGEALTDFIRDDAQHWHSVAGGSCWNVARVGARLGVPTAFAGTVSRDPFG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCH DELMRKSADAGLDMRFIRQVDRAPLLAMVVSKQPPHYFFIGENSADLAFDPADLPVGAFD HHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCEECCCCCCCCCCC AADIVHVGSLGVVREPLASRLIELAQAARAAGKRISFDPNFRAPMAAPSYRDTLRRLTAL CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ADWIKVSDEDLRGLFPELDEAAALAQLRAWAPDATMLVTRGAAGMQLLHRDTVLFQPALP HHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCEEECCCCC AEVADTVGCGDASIGGWLASQLARPEASAAEHLRYAAACAAVACEHAGAYAPTAAEVADM HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH IERTTANAALSQ HHHHHHHHHCCC >Mature Secondary Structure TTTFPRLIVFGEALTDFIRDDAQHWHSVAGGSCWNVARVGARLGVPTAFAGTVSRDPFG CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCH DELMRKSADAGLDMRFIRQVDRAPLLAMVVSKQPPHYFFIGENSADLAFDPADLPVGAFD HHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCCCEECCCCCCCCCCC AADIVHVGSLGVVREPLASRLIELAQAARAAGKRISFDPNFRAPMAAPSYRDTLRRLTAL CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ADWIKVSDEDLRGLFPELDEAAALAQLRAWAPDATMLVTRGAAGMQLLHRDTVLFQPALP HHHHHCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCEEECCCCC AEVADTVGCGDASIGGWLASQLARPEASAAEHLRYAAACAAVACEHAGAYAPTAAEVADM HHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH IERTTANAALSQ HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1809835 [H]