Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689555
Identifier: 116689555
GI number: 116689555
Start: 1694393
End: 1695310
Strand: Reverse
Name: 116689555
Synonym: Bcen2424_1533
Alternate gene names: NA
Gene position: 1695310-1694393 (Counterclockwise)
Preceding gene: 116689556
Following gene: 116689553
Centisome position: 48.66
GC content: 65.9
Gene sequence:
>918_bases ATGAACGAAGGAATGAAGCGCCACGCACGGCATGTCGCCACGGCGGCCGTCGCGTGCGTGCTGTCGCTCGCGCAGGCAAG CCTGCATGCACAGGAAACGGCCGGCGCCGCGAGCGCGGCCCAGGCCACCGCGCTGCCGGCGGATCTCGCGAAAGTCACGC ACGAGCCGCTCGCGCAACAGGCGCGCTGGCTGCGCACGGCGGCTCAGCGCGGCACGCTCGCGCAACTCGACGACGCGACG CTCACCGCGCTCTTCAAGGCGCTCGATCCGCTCGCCGTGCCGCTCTATATCCGCAATGGCCCGAACGGCTATCCGTCCTA CCAGTTCACGATGGTGCGCCAGGAGCGCATCAGCGGAAAATGGTCCGACACGCCCGACCGCATGCTCGTGAAGACGACCC GCGAGCCGCTGCGCGTGTATGCGAAATGGCTGCCGGGCGGCGCGCATGCCGGCCAGGAGACCATCTACGACACGACGCAG CGCAAGGACGAGATGTATGGCCATCTCGGCGGCCTGCTCGGCAAGATTCCGCTGTGGACGGCGATCGACGGCGCGTTGGC GCGCGCGCAGTCGAATCACCAGGTGAAGGATCTCGGCACCGAGTTCATTGCGAACCTGTACCTGACCGAAGGGAAGAAAT ACCTGGAAGCCGGCGTGCAGCGCCCGACCGACGTGGAAGCCAAAACGATCGGCGGTGTGCGCGTCGTCGCGCTCACCTAC GAAACGCCGACCGGCCGGCCGCAGTTCTATGCGAAAAAGGAAGTGCTGGGGCTCGACCTGCACGCACCCTATTTCCGGAC CGTCGAATCCTATGACAACGACGGCAGGATCTTCGAGCGGATCGTCATCGAGAAAATCGCGCCGGCGACCCTCGACGACA CCGCATTCGACCCGAAAAACCCCGACTACGCGTTCTGA
Upstream 100 bases:
>100_bases TCGGCAAGATCCTGCGCCGCGCGCTGCGCGACGAGGAACTCGCCAAAATCAACGCCGCGAAGCAAGGCTGAACGATCCAT CGCCCCGGGAGACGCTGTCG
Downstream 100 bases:
>100_bases CGCGCGCCGGCGGGGCGGTCACGGGCTCAATCGTCATCGTCGTCGCCGTGGTGTCGACGCCAGTGCTTGTAATAGTGCTT GCGCCACTTGCGGTAGCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein Transmembrane
Number of amino acids: Translated: 305; Mature: 305
Protein sequence:
>305_residues MNEGMKRHARHVATAAVACVLSLAQASLHAQETAGAASAAQATALPADLAKVTHEPLAQQARWLRTAAQRGTLAQLDDAT LTALFKALDPLAVPLYIRNGPNGYPSYQFTMVRQERISGKWSDTPDRMLVKTTREPLRVYAKWLPGGAHAGQETIYDTTQ RKDEMYGHLGGLLGKIPLWTAIDGALARAQSNHQVKDLGTEFIANLYLTEGKKYLEAGVQRPTDVEAKTIGGVRVVALTY ETPTGRPQFYAKKEVLGLDLHAPYFRTVESYDNDGRIFERIVIEKIAPATLDDTAFDPKNPDYAF
Sequences:
>Translated_305_residues MNEGMKRHARHVATAAVACVLSLAQASLHAQETAGAASAAQATALPADLAKVTHEPLAQQARWLRTAAQRGTLAQLDDAT LTALFKALDPLAVPLYIRNGPNGYPSYQFTMVRQERISGKWSDTPDRMLVKTTREPLRVYAKWLPGGAHAGQETIYDTTQ RKDEMYGHLGGLLGKIPLWTAIDGALARAQSNHQVKDLGTEFIANLYLTEGKKYLEAGVQRPTDVEAKTIGGVRVVALTY ETPTGRPQFYAKKEVLGLDLHAPYFRTVESYDNDGRIFERIVIEKIAPATLDDTAFDPKNPDYAF >Mature_305_residues MNEGMKRHARHVATAAVACVLSLAQASLHAQETAGAASAAQATALPADLAKVTHEPLAQQARWLRTAAQRGTLAQLDDAT LTALFKALDPLAVPLYIRNGPNGYPSYQFTMVRQERISGKWSDTPDRMLVKTTREPLRVYAKWLPGGAHAGQETIYDTTQ RKDEMYGHLGGLLGKIPLWTAIDGALARAQSNHQVKDLGTEFIANLYLTEGKKYLEAGVQRPTDVEAKTIGGVRVVALTY ETPTGRPQFYAKKEVLGLDLHAPYFRTVESYDNDGRIFERIVIEKIAPATLDDTAFDPKNPDYAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33520; Mature: 33520
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEGMKRHARHVATAAVACVLSLAQASLHAQETAGAASAAQATALPADLAKVTHEPLAQQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHH ARWLRTAAQRGTLAQLDDATLTALFKALDPLAVPLYIRNGPNGYPSYQFTMVRQERISGK HHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEHHHHCCCC WSDTPDRMLVKTTREPLRVYAKWLPGGAHAGQETIYDTTQRKDEMYGHLGGLLGKIPLWT CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH AIDGALARAQSNHQVKDLGTEFIANLYLTEGKKYLEAGVQRPTDVEAKTIGGVRVVALTY HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEECCCEEEEEEEE ETPTGRPQFYAKKEVLGLDLHAPYFRTVESYDNDGRIFERIVIEKIAPATLDDTAFDPKN ECCCCCCCCEEHHHHEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC PDYAF CCCCC >Mature Secondary Structure MNEGMKRHARHVATAAVACVLSLAQASLHAQETAGAASAAQATALPADLAKVTHEPLAQQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHH ARWLRTAAQRGTLAQLDDATLTALFKALDPLAVPLYIRNGPNGYPSYQFTMVRQERISGK HHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEHHHHCCCC WSDTPDRMLVKTTREPLRVYAKWLPGGAHAGQETIYDTTQRKDEMYGHLGGLLGKIPLWT CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH AIDGALARAQSNHQVKDLGTEFIANLYLTEGKKYLEAGVQRPTDVEAKTIGGVRVVALTY HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCEECCCEEEEEEEE ETPTGRPQFYAKKEVLGLDLHAPYFRTVESYDNDGRIFERIVIEKIAPATLDDTAFDPKN ECCCCCCCCEEHHHHEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC PDYAF CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA