Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689550
Identifier: 116689550
GI number: 116689550
Start: 1689145
End: 1690956
Strand: Direct
Name: 116689550
Synonym: Bcen2424_1528
Alternate gene names: NA
Gene position: 1689145-1690956 (Clockwise)
Preceding gene: 116689549
Following gene: 116689551
Centisome position: 48.48
GC content: 64.68
Gene sequence:
>1812_bases GTGACTATCCGGCACAGTGGCGGCACGATCCGCCGCGCGTCACGACAGCGCGGCGCGTTCTCGGTGATGGCGATCATCGC GACGCTGATCGCCATTACGACGCTTGGCGCCATTGGCGTCGGTAATCTCTTTTTCCAGCGTCGGGACGTGCAGCGGATTG CCGACATGGCGGCGCTCGCGGCCGTGCAGCGGATGGACGACGCCTGTTCGCAGCCGACTGCCACCGCGACCAGCAACGCA CAGTCGAACGGGCTCGATGCGTCGAACGGCGACACGATCACCATCGAATGTGGCCGCTGGGATACGTCGGTCAACCCGGC ACCCAGCTACTACGCTGCCGCGACATCCGGAACCACGCAATTGAACGCGGCCAAGGTGGTCGTCACGCGGCAAGTGCCGT TCTTCTTCGTCGGACCGCCGCAGACGGTATCCGCGGTGTCGACCGCGCGGTCGACCAACATCGATACGTTCTCGGTCGGC GCGACCCTGGCCGCGCTCGGCGGAGTGGGTTGCTCAGGCGGATCGGCGCCGACGTCCGGCAATCCGGGGCTCGTCAACGG GCTGATCGGTGCGCTGCTCGGCGCCAACCTGAACCTGAACATCGCATCGTATCAAGCGCTTGCGTGCACGAACGTGACGG TCGGCGACCTCGTTGTGGCGGCGGGCGTCGGGACGGTCGATCAACTGCTCGCGCTGAAACTCACGTTGCCGCAACTGCTC CAGTTGATGGTGAAGGCGGCCACGCAGACGTCCGTCGTCAACGCAAGCCTGCAGGCGAGCCTCGCTACGCTGCAGGCGAT CGTGAACGCCAACGTTCCGGGGACGTCGATCGGCCTCGGCGGCGCGGGCGGCTTGCTGAACGTCGCGCTCGCGGATACGC AGGCGGCGCTCAACGCACAGGTGGATTTGCTCGACCTGCTGATGGTCGGCGCGGAGATCGCGGCAACGGGCAAGCCGGCG GTCGTGGTCAACGTGCCGTCGCTGAATCTCGGCGGGCTGACGGGAACGCAGTTGCAGGTGCAGATCATCAGCCCGCCGTC GATCGGCATCGGCGAGGGCGGGATCGATCCGGCGACGGGAACGTGGCGGACAACGGCGTCGACGGCGGCGGTGGGCGTGT ATCTGAATGTCGAGCTTGGTACGACACAGTTGCCCATCGTCGGGGCGTTGCTTGGCGCGCTCAACGTCGGCGTCGACGTC AACCTGCCGATCTACCTACAGGCTGGTACCGGCACGGCGCGGCTGGACTCGACGCAATGCACGTCGACACAGGCAACCAG CACTGTCGTCATCACTGCGCGACCCGGTGTAGCCAATTTATGCATCGGCCAGCCTCCGCTCGATGCGTCAGGCAAGATCA ATCTGTCGTCGACTTACAGTTGCAAATCGCCCGCCCAGATCATCAACGTCAACGTGCTCGGGCTCGCACAGTTGACGGCC AGTCTGTCCAATATATCGGTTCAGGTGCAGGGCACTGAGCAATCGCACACGTTCAACGGCGTACCCGGAATCGACGCGAA CTATTGGACGGTCAACTCGAATGCGCTCGGTTCAGCGCTCGGTTCAGCGCTGAGCCAACTCGCGGCCGCGACGATCACGG CCAACATCGGACTCGGGGGCGTGAACCTTCTGTCGCTGCCGTCCACCTTCGTGTCCACCTTGCTCACGTTTTTGACCGGC CAGCTCCGCCCACTCCTGTCGAGCCTTGACGCAGTCCTCGTTCCGCTGCTGAATCTGCTTGGCGTCCAGGTCGGCGCGGC GACGGTCCATCAGATCTCGCTCAATTGCGGGGTCGCCCAAACGGTTTACTGA
Upstream 100 bases:
>100_bases GCAGTGGTTCGGCACGATGTCGGCGTCGGGCGGCGGCAGCAGCGGTGGCAGCGGCGGCGGCCTGTCCGGTGGCGACCTCG CGCGCTGACGGAGCAAAACG
Downstream 100 bases:
>100_bases ATAAGCAGATCAGATGAGAAATACGCCCGCAATCGAAGAGCTCGACCTGTACGTCTGGGAAGGCAAGGCGGACATCGTCG ACCGCGTCGCCCGGTGCATG
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MTIRHSGGTIRRASRQRGAFSVMAIIATLIAITTLGAIGVGNLFFQRRDVQRIADMAALAAVQRMDDACSQPTATATSNA QSNGLDASNGDTITIECGRWDTSVNPAPSYYAAATSGTTQLNAAKVVVTRQVPFFFVGPPQTVSAVSTARSTNIDTFSVG ATLAALGGVGCSGGSAPTSGNPGLVNGLIGALLGANLNLNIASYQALACTNVTVGDLVVAAGVGTVDQLLALKLTLPQLL QLMVKAATQTSVVNASLQASLATLQAIVNANVPGTSIGLGGAGGLLNVALADTQAALNAQVDLLDLLMVGAEIAATGKPA VVVNVPSLNLGGLTGTQLQVQIISPPSIGIGEGGIDPATGTWRTTASTAAVGVYLNVELGTTQLPIVGALLGALNVGVDV NLPIYLQAGTGTARLDSTQCTSTQATSTVVITARPGVANLCIGQPPLDASGKINLSSTYSCKSPAQIINVNVLGLAQLTA SLSNISVQVQGTEQSHTFNGVPGIDANYWTVNSNALGSALGSALSQLAAATITANIGLGGVNLLSLPSTFVSTLLTFLTG QLRPLLSSLDAVLVPLLNLLGVQVGAATVHQISLNCGVAQTVY
Sequences:
>Translated_603_residues MTIRHSGGTIRRASRQRGAFSVMAIIATLIAITTLGAIGVGNLFFQRRDVQRIADMAALAAVQRMDDACSQPTATATSNA QSNGLDASNGDTITIECGRWDTSVNPAPSYYAAATSGTTQLNAAKVVVTRQVPFFFVGPPQTVSAVSTARSTNIDTFSVG ATLAALGGVGCSGGSAPTSGNPGLVNGLIGALLGANLNLNIASYQALACTNVTVGDLVVAAGVGTVDQLLALKLTLPQLL QLMVKAATQTSVVNASLQASLATLQAIVNANVPGTSIGLGGAGGLLNVALADTQAALNAQVDLLDLLMVGAEIAATGKPA VVVNVPSLNLGGLTGTQLQVQIISPPSIGIGEGGIDPATGTWRTTASTAAVGVYLNVELGTTQLPIVGALLGALNVGVDV NLPIYLQAGTGTARLDSTQCTSTQATSTVVITARPGVANLCIGQPPLDASGKINLSSTYSCKSPAQIINVNVLGLAQLTA SLSNISVQVQGTEQSHTFNGVPGIDANYWTVNSNALGSALGSALSQLAAATITANIGLGGVNLLSLPSTFVSTLLTFLTG QLRPLLSSLDAVLVPLLNLLGVQVGAATVHQISLNCGVAQTVY >Mature_602_residues TIRHSGGTIRRASRQRGAFSVMAIIATLIAITTLGAIGVGNLFFQRRDVQRIADMAALAAVQRMDDACSQPTATATSNAQ SNGLDASNGDTITIECGRWDTSVNPAPSYYAAATSGTTQLNAAKVVVTRQVPFFFVGPPQTVSAVSTARSTNIDTFSVGA TLAALGGVGCSGGSAPTSGNPGLVNGLIGALLGANLNLNIASYQALACTNVTVGDLVVAAGVGTVDQLLALKLTLPQLLQ LMVKAATQTSVVNASLQASLATLQAIVNANVPGTSIGLGGAGGLLNVALADTQAALNAQVDLLDLLMVGAEIAATGKPAV VVNVPSLNLGGLTGTQLQVQIISPPSIGIGEGGIDPATGTWRTTASTAAVGVYLNVELGTTQLPIVGALLGALNVGVDVN LPIYLQAGTGTARLDSTQCTSTQATSTVVITARPGVANLCIGQPPLDASGKINLSSTYSCKSPAQIINVNVLGLAQLTAS LSNISVQVQGTEQSHTFNGVPGIDANYWTVNSNALGSALGSALSQLAAATITANIGLGGVNLLSLPSTFVSTLLTFLTGQ LRPLLSSLDAVLVPLLNLLGVQVGAATVHQISLNCGVAQTVY
Specific function: Unknown
COG id: COG4655
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60608; Mature: 60477
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIRHSGGTIRRASRQRGAFSVMAIIATLIAITTLGAIGVGNLFFQRRDVQRIADMAALA CEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVQRMDDACSQPTATATSNAQSNGLDASNGDTITIECGRWDTSVNPAPSYYAAATSGTTQ HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCE LNAAKVVVTRQVPFFFVGPPQTVSAVSTARSTNIDTFSVGATLAALGGVGCSGGSAPTSG ECEEEEEEEECCCEEEECCCCHHHHHHHHCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCC NPGLVNGLIGALLGANLNLNIASYQALACTNVTVGDLVVAAGVGTVDQLLALKLTLPQLL CCHHHHHHHHHHHCCCCEEEEECEEEEEECCCCHHHHHEECCCCHHHHHHHHHCCHHHHH QLMVKAATQTSVVNASLQASLATLQAIVNANVPGTSIGLGGAGGLLNVALADTQAALNAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEEEEECCHHHHCCC VDLLDLLMVGAEIAATGKPAVVVNVPSLNLGGLTGTQLQVQIISPPSIGIGEGGIDPATG HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC TWRTTASTAAVGVYLNVELGTTQLPIVGALLGALNVGVDVNLPIYLQAGTGTARLDSTQC CEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCEECCCEEEEEECCCCEEECCCCC TSTQATSTVVITARPGVANLCIGQPPLDASGKINLSSTYSCKSPAQIINVNVLGLAQLTA CCCCCCEEEEEEECCCCCEEECCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEHHHHHH SLSNISVQVQGTEQSHTFNGVPGIDANYWTVNSNALGSALGSALSQLAAATITANIGLGG HHCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEECCCCC VNLLSLPSTFVSTLLTFLTGQLRPLLSSLDAVLVPLLNLLGVQVGAATVHQISLNCGVAQ CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEE TVY CCC >Mature Secondary Structure TIRHSGGTIRRASRQRGAFSVMAIIATLIAITTLGAIGVGNLFFQRRDVQRIADMAALA EEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVQRMDDACSQPTATATSNAQSNGLDASNGDTITIECGRWDTSVNPAPSYYAAATSGTTQ HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCE LNAAKVVVTRQVPFFFVGPPQTVSAVSTARSTNIDTFSVGATLAALGGVGCSGGSAPTSG ECEEEEEEEECCCEEEECCCCHHHHHHHHCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCC NPGLVNGLIGALLGANLNLNIASYQALACTNVTVGDLVVAAGVGTVDQLLALKLTLPQLL CCHHHHHHHHHHHCCCCEEEEECEEEEEECCCCHHHHHEECCCCHHHHHHHHHCCHHHHH QLMVKAATQTSVVNASLQASLATLQAIVNANVPGTSIGLGGAGGLLNVALADTQAALNAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEEEEECCHHHHCCC VDLLDLLMVGAEIAATGKPAVVVNVPSLNLGGLTGTQLQVQIISPPSIGIGEGGIDPATG HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCC TWRTTASTAAVGVYLNVELGTTQLPIVGALLGALNVGVDVNLPIYLQAGTGTARLDSTQC CEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHCCEECCCEEEEEECCCCEEECCCCC TSTQATSTVVITARPGVANLCIGQPPLDASGKINLSSTYSCKSPAQIINVNVLGLAQLTA CCCCCCEEEEEEECCCCCEEECCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEHHHHHH SLSNISVQVQGTEQSHTFNGVPGIDANYWTVNSNALGSALGSALSQLAAATITANIGLGG HHCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHEEEEECCCCC VNLLSLPSTFVSTLLTFLTGQLRPLLSSLDAVLVPLLNLLGVQVGAATVHQISLNCGVAQ CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEE TVY CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA