Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689535
Identifier: 116689535
GI number: 116689535
Start: 1673385
End: 1673846
Strand: Reverse
Name: 116689535
Synonym: Bcen2424_1513
Alternate gene names: NA
Gene position: 1673846-1673385 (Counterclockwise)
Preceding gene: 116689536
Following gene: 116689528
Centisome position: 48.05
GC content: 63.42
Gene sequence:
>462_bases ATGATTCAACTGACTCGCCCGTTGCGTGCAATCGCCATTGCCGGCGCCCTGCTCGCGTGCGCAGCGCCCACCTTCGCGCA AGCCGACAGCCCCATCGGCATGTGGCAAACGATCGACGACAACACCCATCAACCGAAGGCACTCGTGCAGATCGCCGAGG ACGGCGACGGCGCGCTGACCGGCAAGGTCGTCAAGGGCCTCGGCGCGAACGATACGCCCGATCGCCGCTGCACCGCGTGC ACGGACGAGCGCAAGGATCAGCTCATCAAGGGCATGACGATCATCAAGGCGATGAAGAAGGACGGCGACCACTGGGACGG CGGCAACATTCTCGACCCGGAGAACGGCAAGGTCTACAAGTGCAAGATGACGCTTGAAGACGGTGGCCAGAAGCTCGTGG TGCGCGGCTACATCGGCGTGTCGCTGCTCGGTCGCTCACAGACCTGGGTTCGCCAGCAATAA
Upstream 100 bases:
>100_bases GCACGGTTTCACGTATTCTGGCGAAGCTCGCAACATGCCCGCCCCATGCAGACGGGCGTGCGGGCGAATCGAACCGACAT GCAAAACAAGGAGGATGACA
Downstream 100 bases:
>100_bases CGCACCACGCGCCAAAACGCGCGGCTCAATAAAAATCGGCCTGCGACAACGTCGTCAGGCCGATTTCTTTTGGTGCGCGC ACAACGAAAAGCGATGGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 153
Protein sequence:
>153_residues MIQLTRPLRAIAIAGALLACAAPTFAQADSPIGMWQTIDDNTHQPKALVQIAEDGDGALTGKVVKGLGANDTPDRRCTAC TDERKDQLIKGMTIIKAMKKDGDHWDGGNILDPENGKVYKCKMTLEDGGQKLVVRGYIGVSLLGRSQTWVRQQ
Sequences:
>Translated_153_residues MIQLTRPLRAIAIAGALLACAAPTFAQADSPIGMWQTIDDNTHQPKALVQIAEDGDGALTGKVVKGLGANDTPDRRCTAC TDERKDQLIKGMTIIKAMKKDGDHWDGGNILDPENGKVYKCKMTLEDGGQKLVVRGYIGVSLLGRSQTWVRQQ >Mature_153_residues MIQLTRPLRAIAIAGALLACAAPTFAQADSPIGMWQTIDDNTHQPKALVQIAEDGDGALTGKVVKGLGANDTPDRRCTAC TDERKDQLIKGMTIIKAMKKDGDHWDGGNILDPENGKVYKCKMTLEDGGQKLVVRGYIGVSLLGRSQTWVRQQ
Specific function: Unknown
COG id: COG4731
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16547; Mature: 16547
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIQLTRPLRAIAIAGALLACAAPTFAQADSPIGMWQTIDDNTHQPKALVQIAEDGDGALT CCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEE GKVVKGLGANDTPDRRCTACTDERKDQLIKGMTIIKAMKKDGDHWDGGNILDPENGKVYK HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE CKMTLEDGGQKLVVRGYIGVSLLGRSQTWVRQQ EEEEECCCCCEEEEEEEECEEEECCCCCCCCCC >Mature Secondary Structure MIQLTRPLRAIAIAGALLACAAPTFAQADSPIGMWQTIDDNTHQPKALVQIAEDGDGALT CCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEECCCCCCCCCEEEEEECCCCCEEE GKVVKGLGANDTPDRRCTACTDERKDQLIKGMTIIKAMKKDGDHWDGGNILDPENGKVYK HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEE CKMTLEDGGQKLVVRGYIGVSLLGRSQTWVRQQ EEEEECCCCCEEEEEEEECEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA