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The map label for this gene is yhcM [H]

Identifier: 116689533

GI number: 116689533

Start: 1671629

End: 1672726

Strand: Direct

Name: yhcM [H]

Synonym: Bcen2424_1511

Alternate gene names: 116689533

Gene position: 1671629-1672726 (Clockwise)

Preceding gene: 116689532

Following gene: 116689534

Centisome position: 47.98

GC content: 63.11

Gene sequence:

>1098_bases
ATGAACGTCACCGAATACTACACGCGCGAACTGACCACGCGCGGCTATCAGTCCGATCCCGCCCAGCGCGCGGCCGTCGA
TCGCCTGCAGCGCTGCTTCGACGAATGGGTCGACTACAAGGCGCGCCGCTCGAACGCGTTCAAGAAGCTCATCAATCACC
CGGATCTGCCGCGCGGCGTCTACATGTGGGGGGGTGTCGGTCGCGGCAAGAGCTTCCTGATGGACAGCTTCTACGCGGTG
GTGCCCGTGCAGCGCAAGACGCGCCTGCATTTCCACGAATTCATGCGTGAAGTGCACCGCGAACTCGAGGAACTGAAAGG
GCAGGCCGATCCGCTCGACGAACTCGCGCGACGCATCGCGAAGCGTTACCGGCTGATCTGTTTCGACGAGTTCCACGTGT
CGGACATCGCCGACGCGATGATCCTGTACCGCCTGCTCGATCGTCTGTTCAACAACGGCGTGCAGTTCGTGATGACGTCG
AATTACGATCCCGACGATCTGTATCCGGACGGCCTGCATCGCGACCGCATGCTGCCGGCGATCGCGCTGATCAAGGACAA
GCTCGACGTGCTCAACGTCGATGCGGGGGTCGATTATCGCCAGCGCACGCTCGCGCAGGTGAAGATGTATCACACGCCGC
TCGGCGCGGATGCCGATCGCGAACTGCGTCATGCATTCGGCAAGCTCGCGGCCGTGCCCGACGAGAGCCCGATCCTGCAT
ATCGAGAAGCGCGAACTGAAGGCGCTGCGCAAGGCGGACGGCGTCGTGTGGTTCGATTTCGCGACGCTGTGTGGCGGCCC
GCGTTCGCAGAACGACTACCTCGAACTGGCGAGCCGCTTCCATGCGATCGTGCTGTCCGAGGTGCCGCAGATGTCGCCGC
GGATGGCGTCCGAAGCGCGCCGCTTCACGTGGCTCATCGACGTGCTGTACGACCACAAGGTCAAGCTGCTGATGTCCGCG
GCGGTGCCCGCCGAGGACCTGTACGTCGAAGGCCCGATGGCCAACGAATTCGCGCGTACGGTCTCGCGTATCGTCGAGAT
GCAGTCGAAGGAGTATCTCGAAACGCCGCGCCGCATCGTCGATACGTCGTTGACCTGA

Upstream 100 bases:

>100_bases
GCGCGGTATAGCGCCGGCCGGCCATCGGCTGGCGCAACCGTCTCATGACGAAGGCGGGCGGGTTTTTCCCGCTCGCCTTT
GTTTTTTCCGGTTTGCCCCG

Downstream 100 bases:

>100_bases
GTGGATGCGAGCTCGGGTAATTGGCGGGATTTAAACGTCAATTTCGGTTAAATTCAGTCGATCTACGGGTATTTTCGGAT
TTGTCTTATATTCATCGTTG

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQRCFDEWVDYKARRSNAFKKLINHPDLPRGVYMWGGVGRGKSFLMDSFYAV
VPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTS
NYDPDDLYPDGLHRDRMLPAIALIKDKLDVLNVDAGVDYRQRTLAQVKMYHTPLGADADRELRHAFGKLAAVPDESPILH
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSA
AVPAEDLYVEGPMANEFARTVSRIVEMQSKEYLETPRRIVDTSLT

Sequences:

>Translated_365_residues
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQRCFDEWVDYKARRSNAFKKLINHPDLPRGVYMWGGVGRGKSFLMDSFYAV
VPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTS
NYDPDDLYPDGLHRDRMLPAIALIKDKLDVLNVDAGVDYRQRTLAQVKMYHTPLGADADRELRHAFGKLAAVPDESPILH
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSA
AVPAEDLYVEGPMANEFARTVSRIVEMQSKEYLETPRRIVDTSLT
>Mature_365_residues
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQRCFDEWVDYKARRSNAFKKLINHPDLPRGVYMWGGVGRGKSFLMDSFYAV
VPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIAKRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTS
NYDPDDLYPDGLHRDRMLPAIALIKDKLDVLNVDAGVDYRQRTLAQVKMYHTPLGADADRELRHAFGKLAAVPDESPILH
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEARRFTWLIDVLYDHKVKLLMSA
AVPAEDLYVEGPMANEFARTVSRIVEMQSKEYLETPRRIVDTSLT

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=385, Percent_Identity=36.1038961038961, Blast_Score=234, Evalue=1e-61,
Organism=Escherichia coli, GI1789627, Length=363, Percent_Identity=44.3526170798898, Blast_Score=289, Evalue=2e-79,
Organism=Caenorhabditis elegans, GI17505769, Length=414, Percent_Identity=31.4009661835749, Blast_Score=207, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI6320783, Length=317, Percent_Identity=35.0157728706625, Blast_Score=173, Evalue=3e-44,
Organism=Drosophila melanogaster, GI20129913, Length=349, Percent_Identity=33.810888252149, Blast_Score=188, Evalue=5e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42335; Mature: 42335

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQRCFDEWVDYKARRSNAFKKLINHPDLPRGV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIA
EEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTSNYDPDDLYPDGLHRDRMLPA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
IALIKDKLDVLNVDAGVDYRQRTLAQVKMYHTPLGADADRELRHAFGKLAAVPDESPILH
HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEAR
ECHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RFTWLIDVLYDHKVKLLMSAAVPAEDLYVEGPMANEFARTVSRIVEMQSKEYLETPRRIV
HHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
HCCCC
>Mature Secondary Structure
MNVTEYYTRELTTRGYQSDPAQRAAVDRLQRCFDEWVDYKARRSNAFKKLINHPDLPRGV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
YMWGGVGRGKSFLMDSFYAVVPVQRKTRLHFHEFMREVHRELEELKGQADPLDELARRIA
EEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KRYRLICFDEFHVSDIADAMILYRLLDRLFNNGVQFVMTSNYDPDDLYPDGLHRDRMLPA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHH
IALIKDKLDVLNVDAGVDYRQRTLAQVKMYHTPLGADADRELRHAFGKLAAVPDESPILH
HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IEKRELKALRKADGVVWFDFATLCGGPRSQNDYLELASRFHAIVLSEVPQMSPRMASEAR
ECHHHHHHHHHHCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RFTWLIDVLYDHKVKLLMSAAVPAEDLYVEGPMANEFARTVSRIVEMQSKEYLETPRRIV
HHHHHHHHHHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTSLT
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]