Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is pheT [H]
Identifier: 116689502
GI number: 116689502
Start: 1633312
End: 1635741
Strand: Direct
Name: pheT [H]
Synonym: Bcen2424_1480
Alternate gene names: 116689502
Gene position: 1633312-1635741 (Clockwise)
Preceding gene: 162227932
Following gene: 116689503
Centisome position: 46.88
GC content: 65.8
Gene sequence:
>2430_bases ATGCAATTCCCTGAATCCTGGTTGAGAACCTTTGTCGACCCGCAGCTGACGACCGACGAGCTGTCGCACGCGCTGACGAT GGCGGGGCTCGAAGTCGAATCGCTGAGCAAGGCTGCGCCGCCGACGTCGAAGATCGTCGTGGGCCGCGTGCTCGAAGTCG TCAAGCATCCGGATGCGGACAAGCTCAATGTCTGCCAGGTCGACGCCGGCACCGGCGCGACGCTGAACATCGTCTGCGGC GCGCCGAACGTGGCGCCCGGCATCAAGGTGCCGGTCGCGCTGGTGGGCGCGGAACTGCCGCCGGCGGAAGAGGGCGGCAA GCCGTTCGCGATCAAGCTGTCGAAGCTGCGCGGCGTGGAGAGCCAGGGGATGCTGTGCTCGGCGCGCGAGCTGAAGTTGT CCGAGGATCACAGCGGGCTGCTGATCCTGCCGGAAGACACGCCGGTCGGCCAGGACATCCGCGAGACCCTCAATCTCGAT GACACGATCTTCGAAATCAAGCTGACGCCGAACAAGGCCGACTGTCTGTCGGTGTTCGGCATCGCGCGCGAGACGGCCGC GATCACCGGCGCACCGCTGACGCCGGTCGACATCCGTCCGGTGAACGTCGAGCTCGACGAAACGCTGCCGGTGCGCATTG CCGCGCCCGATCTGTGCGGCCGTTTCTCGGGTCGCGTGATCCGCGGCGTGAACGCGCATGCGAAGACGCCGCAGTGGATG GTCGAGCGCCTCGAGCGCTCGGGCCAGCGCAGCGTGTCCGCGCTCGTCGACATCTCGAACTACGTGATGTTCGAACTCGG CCGCCCGTCGCACGTGTTCGATCTCGACAAGATCCACGGCGGCATCGAAGTGCGCTGGGGCAAGCGCGGCGAATCGCTGA AGCTGCTCAACGGCAACACGGTCGAACTCGACGAAACGGTCGGCGTGATCGCGGACGACCGTCAGGTCGAAAGCCTGGCC GGCATCATGGGCGGCGACAGCACGGCCGTCACGCTCGATACGACCAACATCTACCTGGAAGCCGCGTTCTGGTGGCCGGA CAGCATCCGCGGCCGCGCGCGCAAGTACAACTTCTCGACCGATGCGGCCCATCGCTTCGAGCGCGGCGTCGATTACGCGA CGACCGTCGAGCACGTCGAGCGCATTACGCAGCTGATCCTCGAGATCTGCGGCGGCAAGGCCGGCCCGGTCGACGATCAG GCGGTGAACCTGCCGCAGCGCGCGCCGGTGAAGATGCGCGTGTCGCGCGCGAACCGCATCATCGGCGTGAAGATCGACGC CGACGAGATCGCGGACATCTTCACGCGCCTCGGCCTGCCGTTCGAGCGTGAAGACGACGCGTTCCTCGTCACGCCGCCGT CGCATCGCTTCGACATCGAGATCGAGGAAGACCTGATCGAGGAAGTGGCGCGCATCTACGGTTTCGAGAAGATCCCGGCG CGGCCGCCGGTCGCGACGAGCGAAATGCGCGCGACCCACGAGACGCGACGTTCGATCCACGATATCCGTCACGCGCTCGC CGCGCGCGACTACGCGGAAACCGTCAACTTCAGCTTCGTCGATGCGGAGTGGGAGCACGATTTCGCGGGCAACGACAACC CGATCCGCCTGCTGAACCCGATCGCGAGCCAGCTTTCGGTGATGCGCACGACGCTGTTCGGCAGCCTGATCGCCGTACTG CGCCACAACCTGAACCGCCGCGCCGATCGCGTGCGCGTGTTCGAATCGGGGCGCGTGTTCGTCGCCGATCCGTCGGTGAA GGCCGGCGAGCTGGCGGTCGAAGGTCATGCGCAGCCGAAGCGCGTCGGCGCGCTGGCGTACGGTCCGGCACTCGACGAGC AGTGGGGCGTGGCGACCCGCGCGGTCGATTTCTTCGACGTGAAGGGTGATCTCGAAGCGCTGCTCGCGCCGGCGGTTGCA CGTTTCGTGAAGGCCGAGCATCCGGCCCTTCATCCGGGGCGCAGCGCACGGATCGAAATCGATGGCCGTGCGGTCGGCTG GATCGGCGAGTTGCATCCGCGCCTGATGCAGAAATACGAGCTGCCGCACCCGCCGGTGATGTTCGAAATCGACGCGGACG CGCTGATTGCCCGGACGCTGCCCGCGCCGACCGACGTGTCGAAATTCCCGCCGGTCCGTCGCGATATCGCCGTTGTCGTC GATCAGGCGGTCGAGGTTCAGGCACTTTTCGACGAAATGAAGAAGGCGCTTGCCGAAGAGGCCTGCCGATTCGTTCAGAA GGTTGTACTCTTCGACGAATTTCGTGCAAAATCAAATACTTCCGGTGGTCTTGCCGCGAACGAGAAGAGCCTTGCCTTCC GCGTGACGCTGCAGGACGCGGCTGGCACGCTGCAGGACGAGGTCGTCGATCAGGCGATTCAGACGCTGGTCGAGCGAATG GCTCGTGCCGGTGCGCGCCTGCGCGGCTAA
Upstream 100 bases:
>100_bases AACGCCGCTCGCCGCGCCGACCTGTGCCCGCGCACGCCCCCGATGGACGTTTCCGACGGGGCCCGGGCGTCGATCTAACC TGTTTCGAACGTAGACATCC
Downstream 100 bases:
>100_bases GGAGAGGGCCCGCCCGTTCGCGGGCGGCTTTTTTCCATCGTAAGTTTTGATTCAACGCGCTGTATGGCAGATATGAACGA CATGACCTCGAGTGAATTCG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 809; Mature: 809
Protein sequence:
>809_residues MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLSKAAPPTSKIVVGRVLEVVKHPDADKLNVCQVDAGTGATLNIVCG APNVAPGIKVPVALVGAELPPAEEGGKPFAIKLSKLRGVESQGMLCSARELKLSEDHSGLLILPEDTPVGQDIRETLNLD DTIFEIKLTPNKADCLSVFGIARETAAITGAPLTPVDIRPVNVELDETLPVRIAAPDLCGRFSGRVIRGVNAHAKTPQWM VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGGIEVRWGKRGESLKLLNGNTVELDETVGVIADDRQVESLA GIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRARKYNFSTDAAHRFERGVDYATTVEHVERITQLILEICGGKAGPVDDQ AVNLPQRAPVKMRVSRANRIIGVKIDADEIADIFTRLGLPFEREDDAFLVTPPSHRFDIEIEEDLIEEVARIYGFEKIPA RPPVATSEMRATHETRRSIHDIRHALAARDYAETVNFSFVDAEWEHDFAGNDNPIRLLNPIASQLSVMRTTLFGSLIAVL RHNLNRRADRVRVFESGRVFVADPSVKAGELAVEGHAQPKRVGALAYGPALDEQWGVATRAVDFFDVKGDLEALLAPAVA RFVKAEHPALHPGRSARIEIDGRAVGWIGELHPRLMQKYELPHPPVMFEIDADALIARTLPAPTDVSKFPPVRRDIAVVV DQAVEVQALFDEMKKALAEEACRFVQKVVLFDEFRAKSNTSGGLAANEKSLAFRVTLQDAAGTLQDEVVDQAIQTLVERM ARAGARLRG
Sequences:
>Translated_809_residues MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLSKAAPPTSKIVVGRVLEVVKHPDADKLNVCQVDAGTGATLNIVCG APNVAPGIKVPVALVGAELPPAEEGGKPFAIKLSKLRGVESQGMLCSARELKLSEDHSGLLILPEDTPVGQDIRETLNLD DTIFEIKLTPNKADCLSVFGIARETAAITGAPLTPVDIRPVNVELDETLPVRIAAPDLCGRFSGRVIRGVNAHAKTPQWM VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGGIEVRWGKRGESLKLLNGNTVELDETVGVIADDRQVESLA GIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRARKYNFSTDAAHRFERGVDYATTVEHVERITQLILEICGGKAGPVDDQ AVNLPQRAPVKMRVSRANRIIGVKIDADEIADIFTRLGLPFEREDDAFLVTPPSHRFDIEIEEDLIEEVARIYGFEKIPA RPPVATSEMRATHETRRSIHDIRHALAARDYAETVNFSFVDAEWEHDFAGNDNPIRLLNPIASQLSVMRTTLFGSLIAVL RHNLNRRADRVRVFESGRVFVADPSVKAGELAVEGHAQPKRVGALAYGPALDEQWGVATRAVDFFDVKGDLEALLAPAVA RFVKAEHPALHPGRSARIEIDGRAVGWIGELHPRLMQKYELPHPPVMFEIDADALIARTLPAPTDVSKFPPVRRDIAVVV DQAVEVQALFDEMKKALAEEACRFVQKVVLFDEFRAKSNTSGGLAANEKSLAFRVTLQDAAGTLQDEVVDQAIQTLVERM ARAGARLRG >Mature_809_residues MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLSKAAPPTSKIVVGRVLEVVKHPDADKLNVCQVDAGTGATLNIVCG APNVAPGIKVPVALVGAELPPAEEGGKPFAIKLSKLRGVESQGMLCSARELKLSEDHSGLLILPEDTPVGQDIRETLNLD DTIFEIKLTPNKADCLSVFGIARETAAITGAPLTPVDIRPVNVELDETLPVRIAAPDLCGRFSGRVIRGVNAHAKTPQWM VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGGIEVRWGKRGESLKLLNGNTVELDETVGVIADDRQVESLA GIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRARKYNFSTDAAHRFERGVDYATTVEHVERITQLILEICGGKAGPVDDQ AVNLPQRAPVKMRVSRANRIIGVKIDADEIADIFTRLGLPFEREDDAFLVTPPSHRFDIEIEEDLIEEVARIYGFEKIPA RPPVATSEMRATHETRRSIHDIRHALAARDYAETVNFSFVDAEWEHDFAGNDNPIRLLNPIASQLSVMRTTLFGSLIAVL RHNLNRRADRVRVFESGRVFVADPSVKAGELAVEGHAQPKRVGALAYGPALDEQWGVATRAVDFFDVKGDLEALLAPAVA RFVKAEHPALHPGRSARIEIDGRAVGWIGELHPRLMQKYELPHPPVMFEIDADALIARTLPAPTDVSKFPPVRRDIAVVV DQAVEVQALFDEMKKALAEEACRFVQKVVLFDEFRAKSNTSGGLAANEKSLAFRVTLQDAAGTLQDEVVDQAIQTLVERM ARAGARLRG
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI124028525, Length=400, Percent_Identity=24.25, Blast_Score=86, Evalue=1e-16, Organism=Escherichia coli, GI1788006, Length=815, Percent_Identity=42.4539877300613, Blast_Score=624, Evalue=1e-179, Organism=Drosophila melanogaster, GI21355211, Length=396, Percent_Identity=26.2626262626263, Blast_Score=95, Evalue=2e-19,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 88715; Mature: 88715
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLSKAAPPTSKIVVGRVLEVVKHPDAD CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCC KLNVCQVDAGTGATLNIVCGAPNVAPGIKVPVALVGAELPPAEEGGKPFAIKLSKLRGVE CCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHEECCCCCCCCCCCCEEEEEEHHHCCCC SQGMLCSARELKLSEDHSGLLILPEDTPVGQDIRETLNLDDTIFEIKLTPNKADCLSVFG CCCCEEEHHHCEECCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHH IARETAAITGAPLTPVDIRPVNVELDETLPVRIAAPDLCGRFSGRVIRGVNAHAKTPQWM HHHHHHEECCCCCCCCCEEEEEEEECCCCCEEEECCHHHHHCCCCEEECCCCCCCCHHHH VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGGIEVRWGKRGESLKLLNGNT HHHHHHCCHHHHHHHHHHCCEEEEEECCCCCEEEHHHHCCCEEEEECCCCCEEEEECCCE VELDETVGVIADDRQVESLAGIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRARKYNFST EEECCCCCEEECCHHHHHHHHHCCCCCEEEEEEECEEEEEEEEECCHHHCCCCEEECCCC DAAHRFERGVDYATTVEHVERITQLILEICGGKAGPVDDQAVNLPQRAPVKMRVSRANRI HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCEEEEECCCEE IGVKIDADEIADIFTRLGLPFEREDDAFLVTPPSHRFDIEIEEDLIEEVARIYGFEKIPA EEEEECHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEEHHHHHHHHHHHCCCCCCCC RPPVATSEMRATHETRRSIHDIRHALAARDYAETVNFSFVDAEWEHDFAGNDNPIRLLNP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEHHHH IASQLSVMRTTLFGSLIAVLRHNLNRRADRVRVFESGRVFVADPSVKAGELAVEGHAQPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCEEEECCCCCH RVGALAYGPALDEQWGVATRAVDFFDVKGDLEALLAPAVARFVKAEHPALHPGRSARIEI HCCEEEECCCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE DGRAVGWIGELHPRLMQKYELPHPPVMFEIDADALIARTLPAPTDVSKFPPVRRDIAVVV CCCEEECHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCHHHHHHHH DQAVEVQALFDEMKKALAEEACRFVQKVVLFDEFRAKSNTSGGLAANEKSLAFRVTLQDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEECCC AGTLQDEVVDQAIQTLVERMARAGARLRG CCHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MQFPESWLRTFVDPQLTTDELSHALTMAGLEVESLSKAAPPTSKIVVGRVLEVVKHPDAD CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCC KLNVCQVDAGTGATLNIVCGAPNVAPGIKVPVALVGAELPPAEEGGKPFAIKLSKLRGVE CCEEEEEECCCCCEEEEEECCCCCCCCCCCCHHEECCCCCCCCCCCCEEEEEEHHHCCCC SQGMLCSARELKLSEDHSGLLILPEDTPVGQDIRETLNLDDTIFEIKLTPNKADCLSVFG CCCCEEEHHHCEECCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHH IARETAAITGAPLTPVDIRPVNVELDETLPVRIAAPDLCGRFSGRVIRGVNAHAKTPQWM HHHHHHEECCCCCCCCCEEEEEEEECCCCCEEEECCHHHHHCCCCEEECCCCCCCCHHHH VERLERSGQRSVSALVDISNYVMFELGRPSHVFDLDKIHGGIEVRWGKRGESLKLLNGNT HHHHHHCCHHHHHHHHHHCCEEEEEECCCCCEEEHHHHCCCEEEEECCCCCEEEEECCCE VELDETVGVIADDRQVESLAGIMGGDSTAVTLDTTNIYLEAAFWWPDSIRGRARKYNFST EEECCCCCEEECCHHHHHHHHHCCCCCEEEEEEECEEEEEEEEECCHHHCCCCEEECCCC DAAHRFERGVDYATTVEHVERITQLILEICGGKAGPVDDQAVNLPQRAPVKMRVSRANRI HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCEEEEECCCEE IGVKIDADEIADIFTRLGLPFEREDDAFLVTPPSHRFDIEIEEDLIEEVARIYGFEKIPA EEEEECHHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEEHHHHHHHHHHHCCCCCCCC RPPVATSEMRATHETRRSIHDIRHALAARDYAETVNFSFVDAEWEHDFAGNDNPIRLLNP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEHHHH IASQLSVMRTTLFGSLIAVLRHNLNRRADRVRVFESGRVFVADPSVKAGELAVEGHAQPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCCCCEEEECCCCCH RVGALAYGPALDEQWGVATRAVDFFDVKGDLEALLAPAVARFVKAEHPALHPGRSARIEI HCCEEEECCCCCCCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE DGRAVGWIGELHPRLMQKYELPHPPVMFEIDADALIARTLPAPTDVSKFPPVRRDIAVVV CCCEEECHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCHHHHHHHH DQAVEVQALFDEMKKALAEEACRFVQKVVLFDEFRAKSNTSGGLAANEKSLAFRVTLQDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEEEEECCC AGTLQDEVVDQAIQTLVERMARAGARLRG CCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA