| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689485
Identifier: 116689485
GI number: 116689485
Start: 1618500
End: 1618940
Strand: Direct
Name: 116689485
Synonym: Bcen2424_1463
Alternate gene names: NA
Gene position: 1618500-1618940 (Clockwise)
Preceding gene: 116689484
Following gene: 116689487
Centisome position: 46.46
GC content: 64.85
Gene sequence:
>441_bases ATGAGCGCAACAAGCGATTACTCCCCCGTTTTTGAGATGTCGATGCCGATCCGCTGGGGCGACATGGACGCGTTTGGTCA TGTCAACAACACGGTCTATTTCCGCTACATGGAGCAGGCGCGGATTTCGTGGTTCGAGCAACTCGGCATTGCCGGCGGCA ACGGCGAGGGGCAGGGGCCCGTCATCGTCACCGCGTCGATGGAATTCCTCAAGCAGCTGCACTATCCGGGCGACGTGATC GCGAGGATGTCGGCCGCGAAGCCCGGCCGAAGCAGTTTCGACACCGGGTTCGAGCTCACGCGCGCGGACGATCCGCAGCA TGTCTACGCACGCGGCAACGCGCGCTGCGTGTGGGTCGACTACGCGCTCGGCAAGTCGGTGCCGCTGCCGCCCCTGCTGC GCGACACGATCGAGCGCGCGCTCGCGGCGAAAGTCGGCTGA
Upstream 100 bases:
>100_bases CGGCCGACGAGTCGCAGTTCATCAATGGCTCGATCATCTCCGCGGACGACGGCTTCGGCCTCGCCTGAGCGGGTGACATT CAGCAACAAAGAAGACTGCA
Downstream 100 bases:
>100_bases GCGCGCATACCGGCAGGCCGGCACCGGGTCGCCGGTGGCGCGCCGTGCCCGTTGTTTCCCCCGGTCGGCCGCCGCGTGCG GCCGATCGTCATTCGAGCGC
Product: thioesterase superfamily protein
Products: NA
Alternate protein names: Thioesterase; Thioesterase Superfamily; Thioesterase Family Protein; Thiesterase; Thioesterase Family Protein Domain Protein
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MSATSDYSPVFEMSMPIRWGDMDAFGHVNNTVYFRYMEQARISWFEQLGIAGGNGEGQGPVIVTASMEFLKQLHYPGDVI ARMSAAKPGRSSFDTGFELTRADDPQHVYARGNARCVWVDYALGKSVPLPPLLRDTIERALAAKVG
Sequences:
>Translated_146_residues MSATSDYSPVFEMSMPIRWGDMDAFGHVNNTVYFRYMEQARISWFEQLGIAGGNGEGQGPVIVTASMEFLKQLHYPGDVI ARMSAAKPGRSSFDTGFELTRADDPQHVYARGNARCVWVDYALGKSVPLPPLLRDTIERALAAKVG >Mature_145_residues SATSDYSPVFEMSMPIRWGDMDAFGHVNNTVYFRYMEQARISWFEQLGIAGGNGEGQGPVIVTASMEFLKQLHYPGDVIA RMSAAKPGRSSFDTGFELTRADDPQHVYARGNARCVWVDYALGKSVPLPPLLRDTIERALAAKVG
Specific function: Unknown
COG id: COG0824
COG function: function code R; Predicted thioesterase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16134; Mature: 16003
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATSDYSPVFEMSMPIRWGDMDAFGHVNNTVYFRYMEQARISWFEQLGIAGGNGEGQGP CCCCCCCCCEEEEECCEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCC VIVTASMEFLKQLHYPGDVIARMSAAKPGRSSFDTGFELTRADDPQHVYARGNARCVWVD EEEEECHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEECCCEEEEEEE YALGKSVPLPPLLRDTIERALAAKVG ECCCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure SATSDYSPVFEMSMPIRWGDMDAFGHVNNTVYFRYMEQARISWFEQLGIAGGNGEGQGP CCCCCCCCEEEEECCEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCC VIVTASMEFLKQLHYPGDVIARMSAAKPGRSSFDTGFELTRADDPQHVYARGNARCVWVD EEEEECHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEECCCCCCEEEECCCEEEEEEE YALGKSVPLPPLLRDTIERALAAKVG ECCCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA