Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
---|---|
Accession | NC_008542 |
Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is plcC [H]
Identifier: 116689423
GI number: 116689423
Start: 1545111
End: 1546697
Strand: Reverse
Name: plcC [H]
Synonym: Bcen2424_1401
Alternate gene names: 116689423
Gene position: 1546697-1545111 (Counterclockwise)
Preceding gene: 116689427
Following gene: 116689416
Centisome position: 44.4
GC content: 67.3
Gene sequence:
>1587_bases ATGAAGAAGCACGCCTGGATTCGCTACACGCCGATCGCCCTCGCGGCCGCGCTCAGCCTGACCGCCTGCGGCGGCGACGA CGTCACGCAACAGGGCCTGTCGGCCGTCAAGAACGTCGTCGTGATCTACGCGGAAAACCGCAGCTTCGACAACCTGTACG GCAACTTCCCCGGCGCGAACGGCCTGCAGAACGCGACGGCCGCGAATTCGGTGCAGAAGGATCGCGACGGCTCGACGATG GCGACGCTGCCGAAGATCTGGGGCGGCCTCACCGCGACCGGCATCACGCCGGCGGTGACCGAGGCGATGACGGCGAACCT GCCGAACGCGCCGTTCGCGATCGACGATCCGAAAGGCTTCAACCAGTCGATGAGCATCGCGACGCGCGACATCGTGCACC GCTTCTACCAGGACCAGATGCAGATCAACGGCGGCAAGAACGACATGTACGCCGCCTGGACCGACGCGGGCGGCCTGACG ATGGGCCACTACACGGCCGATCCGTCGAAGCTGCCGCTGTGGAAGATCGCGCAGCAGTACGTGCTCGCCGACAACTTCTT CATGGGCGCGTTCGGCGGTTCGTTCCTGAACCACCAGTACCTGATCTGCGCGTGCGCGCCGTACTACGCGAATGCCGACA AGAGCCCGGCGGCCGGCAAGATCGCCGTGCTGAACGCCGACGGCAAATCGCTGAAGGTCGCGACGAATTCGCCGGCGTCC GCGCTGAGCGGCCCGCCGAAGTTTGTCAACGACGGCGCGCTCACGCCCGACTTCTACGGCATCAACACGATGCAGCCGGC GTATCAGCCGAGCGGCAACAAGGCGGCCGCGGGCGGCGATCCGCTGCTCGCCGACCCCGCCAATCCGTCGACGATGCCGC CGCAGACGGCGACCAACATCGGCGACCTGATGACCAACGCGGGCGTGTCGTGGGCGTGGTATTCCGGCGCGTGGGGCCAG GCGCTGCAGGCGAGCCAGAACGGCACGTCGAACGTGATCTACGGCGCCGACCTGTCGACGCCGAACTTCCAGCCGCACCA CCAGCCGTTCAACTACTTCGCGAACCAGGCGCCGGGCACCGCGAGCCGCGCGCAGCACCTGCTCGACGGCGGCGCGAACG GCGCCGAGTTCATCAAGGCGATCGACGCGGGCACGCTGCCGCAGGTCACGTTCTACAAGCCGCAAGGCAACCTGAACGAG CACCCGGGTTACACGGACGTCACGTCCGGCGACCAGCACATCGCCGACGTGATCGCGCACCTGCAGGCGAGCCCGCAGTG GAAGAACATGGTCGTGGTCGTCACGTACGACGAAAACGGCGGCTTCTGGGATCATGCGACGCCGCCGAACGCCGACCGCT GGGGCCCGGGCACCCGCATTCCTGCGCTGATCGTGTCGCCGTATGCGAAGAAGGGCTTCGTCGATCACACGCAGTACGAC ACGGGTTCGATCCTGCGCTTCATCACGCGCCGCTTCTCGCTGCCGCGCCTCGCGGGCCTGCAGCAGCGCGACGACGCGCT GAAGGCGAACGGCGCGCAGCCGATGGGTGACCTGACGAACGCGCTCGCGCTGTCGCCGAACCTGTAA
Upstream 100 bases:
>100_bases GATAATGCGCGCAGCCGGGCGGTACCGCGAGGTTCGCGCGCCGGCCCTCCCGCCACCCGGTTCCCACACGCGACCAACGA CGAATGAGAGAGAACATCGC
Downstream 100 bases:
>100_bases CGGCATCGCCATCCCCGCGAACGGGCCGACCAAACTGCCGGCCCGGACGAACGAAGGGCAGCCCCGCGGGGCTGCCCTTT TTCATGTCGCGTGCGGGTTG
Product: phosphoesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 528; Mature: 528
Protein sequence:
>528_residues MKKHAWIRYTPIALAAALSLTACGGDDVTQQGLSAVKNVVVIYAENRSFDNLYGNFPGANGLQNATAANSVQKDRDGSTM ATLPKIWGGLTATGITPAVTEAMTANLPNAPFAIDDPKGFNQSMSIATRDIVHRFYQDQMQINGGKNDMYAAWTDAGGLT MGHYTADPSKLPLWKIAQQYVLADNFFMGAFGGSFLNHQYLICACAPYYANADKSPAAGKIAVLNADGKSLKVATNSPAS ALSGPPKFVNDGALTPDFYGINTMQPAYQPSGNKAAAGGDPLLADPANPSTMPPQTATNIGDLMTNAGVSWAWYSGAWGQ ALQASQNGTSNVIYGADLSTPNFQPHHQPFNYFANQAPGTASRAQHLLDGGANGAEFIKAIDAGTLPQVTFYKPQGNLNE HPGYTDVTSGDQHIADVIAHLQASPQWKNMVVVVTYDENGGFWDHATPPNADRWGPGTRIPALIVSPYAKKGFVDHTQYD TGSILRFITRRFSLPRLAGLQQRDDALKANGAQPMGDLTNALALSPNL
Sequences:
>Translated_528_residues MKKHAWIRYTPIALAAALSLTACGGDDVTQQGLSAVKNVVVIYAENRSFDNLYGNFPGANGLQNATAANSVQKDRDGSTM ATLPKIWGGLTATGITPAVTEAMTANLPNAPFAIDDPKGFNQSMSIATRDIVHRFYQDQMQINGGKNDMYAAWTDAGGLT MGHYTADPSKLPLWKIAQQYVLADNFFMGAFGGSFLNHQYLICACAPYYANADKSPAAGKIAVLNADGKSLKVATNSPAS ALSGPPKFVNDGALTPDFYGINTMQPAYQPSGNKAAAGGDPLLADPANPSTMPPQTATNIGDLMTNAGVSWAWYSGAWGQ ALQASQNGTSNVIYGADLSTPNFQPHHQPFNYFANQAPGTASRAQHLLDGGANGAEFIKAIDAGTLPQVTFYKPQGNLNE HPGYTDVTSGDQHIADVIAHLQASPQWKNMVVVVTYDENGGFWDHATPPNADRWGPGTRIPALIVSPYAKKGFVDHTQYD TGSILRFITRRFSLPRLAGLQQRDDALKANGAQPMGDLTNALALSPNL >Mature_528_residues MKKHAWIRYTPIALAAALSLTACGGDDVTQQGLSAVKNVVVIYAENRSFDNLYGNFPGANGLQNATAANSVQKDRDGSTM ATLPKIWGGLTATGITPAVTEAMTANLPNAPFAIDDPKGFNQSMSIATRDIVHRFYQDQMQINGGKNDMYAAWTDAGGLT MGHYTADPSKLPLWKIAQQYVLADNFFMGAFGGSFLNHQYLICACAPYYANADKSPAAGKIAVLNADGKSLKVATNSPAS ALSGPPKFVNDGALTPDFYGINTMQPAYQPSGNKAAAGGDPLLADPANPSTMPPQTATNIGDLMTNAGVSWAWYSGAWGQ ALQASQNGTSNVIYGADLSTPNFQPHHQPFNYFANQAPGTASRAQHLLDGGANGAEFIKAIDAGTLPQVTFYKPQGNLNE HPGYTDVTSGDQHIADVIAHLQASPQWKNMVVVVTYDENGGFWDHATPPNADRWGPGTRIPALIVSPYAKKGFVDHTQYD TGSILRFITRRFSLPRLAGLQQRDDALKANGAQPMGDLTNALALSPNL
Specific function: Unknown
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR006311 [H]
Pfam domain/function: PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 56200; Mature: 56200
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00626 RCC1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKHAWIRYTPIALAAALSLTACGGDDVTQQGLSAVKNVVVIYAENRSFDNLYGNFPGAN CCCCCEEEECHHHHHHHHHHEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCCC GLQNATAANSVQKDRDGSTMATLPKIWGGLTATGITPAVTEAMTANLPNAPFAIDDPKGF CCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCC NQSMSIATRDIVHRFYQDQMQINGGKNDMYAAWTDAGGLTMGHYTADPSKLPLWKIAQQY CCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHH VLADNFFMGAFGGSFLNHQYLICACAPYYANADKSPAAGKIAVLNADGKSLKVATNSPAS HHHCCCEEECCCCHHHCCCEEEEEECCHHCCCCCCCCCCEEEEEECCCCEEEEECCCCHH ALSGPPKFVNDGALTPDFYGINTMQPAYQPSGNKAAAGGDPLLADPANPSTMPPQTATNI HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHH GDLMTNAGVSWAWYSGAWGQALQASQNGTSNVIYGADLSTPNFQPHHQPFNYFANQAPGT HHHHHCCCCCEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCH ASRAQHLLDGGANGAEFIKAIDAGTLPQVTFYKPQGNLNEHPGYTDVTSGDQHIADVIAH HHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH LQASPQWKNMVVVVTYDENGGFWDHATPPNADRWGPGTRIPALIVSPYAKKGFVDHTQYD HHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCC TGSILRFITRRFSLPRLAGLQQRDDALKANGAQPMGDLTNALALSPNL HHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCCC >Mature Secondary Structure MKKHAWIRYTPIALAAALSLTACGGDDVTQQGLSAVKNVVVIYAENRSFDNLYGNFPGAN CCCCCEEEECHHHHHHHHHHEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCCC GLQNATAANSVQKDRDGSTMATLPKIWGGLTATGITPAVTEAMTANLPNAPFAIDDPKGF CCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCC NQSMSIATRDIVHRFYQDQMQINGGKNDMYAAWTDAGGLTMGHYTADPSKLPLWKIAQQY CCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCEEECCCCCCCCCCCHHHHHHHH VLADNFFMGAFGGSFLNHQYLICACAPYYANADKSPAAGKIAVLNADGKSLKVATNSPAS HHHCCCEEECCCCHHHCCCEEEEEECCHHCCCCCCCCCCEEEEEECCCCEEEEECCCCHH ALSGPPKFVNDGALTPDFYGINTMQPAYQPSGNKAAAGGDPLLADPANPSTMPPQTATNI HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHH GDLMTNAGVSWAWYSGAWGQALQASQNGTSNVIYGADLSTPNFQPHHQPFNYFANQAPGT HHHHHCCCCCEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCCCCCH ASRAQHLLDGGANGAEFIKAIDAGTLPQVTFYKPQGNLNEHPGYTDVTSGDQHIADVIAH HHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH LQASPQWKNMVVVVTYDENGGFWDHATPPNADRWGPGTRIPALIVSPYAKKGFVDHTQYD HHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCCCCCCC TGSILRFITRRFSLPRLAGLQQRDDALKANGAQPMGDLTNALALSPNL HHHHHHHHHHHCCCHHHHCCCHHHHHHHCCCCCCHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]