Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689343
Identifier: 116689343
GI number: 116689343
Start: 1453012
End: 1454283
Strand: Reverse
Name: 116689343
Synonym: Bcen2424_1321
Alternate gene names: NA
Gene position: 1454283-1453012 (Counterclockwise)
Preceding gene: 116689344
Following gene: 116689342
Centisome position: 41.74
GC content: 45.52
Gene sequence:
>1272_bases ATGTATTCAAAAACAAAAGTTGACCGCGCGGGCCTAGCGCTCGCCAAAGACAAATATCGCGACGAGAATGAATACTTCGA GCTAGAGGAGGTATTTGACGAATACCGCAAGGCGCACTTGCAACCGTTGTCTGAGACGACTCTCGAACTCCAGCACCTTC TATCCAACTACGGTGCCCAATACTACATCGCTCAGCGCCTTAAGCGAAAACCGCAAATCATCCGAAAACTCAATAGATTG AGCGTGCGTCTAACGCAGCTACAAGACATCGGCGGGTGTCGCATCATCGTCCAAAAGAACTCAGACGTTGACAGAATCCA TAAGTACCTAATTGATAAGGTAAATTCACAAAATGTATTTACTATCGATAGAACGACGGACTATCGAGATCTTGGTCGAG ATTATACGGGATACCGTTCCCTTCACGTGATTTTGAAACGCGGCGGAGTACATCTGGAGCTTCAAATTCGGAGCAGAATT CAACATTATTGGTCGGAAAGTATCGAGCGTACGTCTGTTATCTATGGCTATCACCTCAAGGAAGGCGAAGGCGATGAGCG GGTCATTGGATACTTTAAAAACTTGTCCGATGTTTTCTATGAGATTGAGGCAGGGCGCGAGCCTTCCATTGATAAACGCC TGAAAGTAGATGAGCTTCGAGGTGAATGCGAGCAACTCATCGAACAGTCCGATCGATACAAAGTATTTGACAGCTTCGTC AATGAGGACATTATCAAAACCCTAACCGAGAAGGAAAGCAAGAATTCGGGGGGGCTCAATAATTGGATTCTCGTTTTTGA CTGGAATGCCGGGGCTTTCGTTAGCTGGGACATTGTTAGTCGAAATCCGAATGACGCCGTTGAAACTTACATCGAGTACG AAAAAATGTTTCCCGTCGAGTCGGGATATGAGGTGGTGCTCGTTGGGTCATCTGAGGTGGCCACTGTTAGACAGACTCAT AGCCATTACTTTGGCATCGAGAGCTATCATAATATTCTCGAGAGTTTGGACACATCCATCGTCGGATTCAGTAGAAAAAT TGACATCGATATCGGTGCTAGACAAATTTTGTCGACTCTGCACCGACGCCGTTTTTGGGGAAAGAAAACAGTTTCTGTGG ATACGTTGAGCAATCATTTCTGCAAGAGTGTACTTACGTTTGAGTCATCGCTTCGGTCTCTTCAGGAGCGTCAATTGGTA CAGGTATCGTCGTTGAATGGCGGGATCTCTCTCAATATTCACAAGAAGTCTGAAATTGAACAGTATGTATAA
Upstream 100 bases:
>100_bases CTGTCAACTCATTCCCAAAAGTGCAACACTGAAAAAGGCCGAAGTCCGATCCGAACACAGAGGCCAAACACAGACCATCG CAAATACTTCGACTAAGTCT
Downstream 100 bases:
>100_bases CGGGACCGCTCCTCGATAACGCGCAGGACCCGCCGTAAGGGGCCGTACGCCCGTCCAATCACTGATGACGTGATTTACAT AATCCGAGCGCGAAGGTTCG
Product: RelA/SpoT domain-containing protein
Products: NA
Alternate protein names: RelA/SpoT Domain-Containing Protein; Stringent Response Modulating PpGpp Metabolism Protein; RelA/SpoT; GTP Pyrophosphokinase; Rela/Spot Domain Protein
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MYSKTKVDRAGLALAKDKYRDENEYFELEEVFDEYRKAHLQPLSETTLELQHLLSNYGAQYYIAQRLKRKPQIIRKLNRL SVRLTQLQDIGGCRIIVQKNSDVDRIHKYLIDKVNSQNVFTIDRTTDYRDLGRDYTGYRSLHVILKRGGVHLELQIRSRI QHYWSESIERTSVIYGYHLKEGEGDERVIGYFKNLSDVFYEIEAGREPSIDKRLKVDELRGECEQLIEQSDRYKVFDSFV NEDIIKTLTEKESKNSGGLNNWILVFDWNAGAFVSWDIVSRNPNDAVETYIEYEKMFPVESGYEVVLVGSSEVATVRQTH SHYFGIESYHNILESLDTSIVGFSRKIDIDIGARQILSTLHRRRFWGKKTVSVDTLSNHFCKSVLTFESSLRSLQERQLV QVSSLNGGISLNIHKKSEIEQYV
Sequences:
>Translated_423_residues MYSKTKVDRAGLALAKDKYRDENEYFELEEVFDEYRKAHLQPLSETTLELQHLLSNYGAQYYIAQRLKRKPQIIRKLNRL SVRLTQLQDIGGCRIIVQKNSDVDRIHKYLIDKVNSQNVFTIDRTTDYRDLGRDYTGYRSLHVILKRGGVHLELQIRSRI QHYWSESIERTSVIYGYHLKEGEGDERVIGYFKNLSDVFYEIEAGREPSIDKRLKVDELRGECEQLIEQSDRYKVFDSFV NEDIIKTLTEKESKNSGGLNNWILVFDWNAGAFVSWDIVSRNPNDAVETYIEYEKMFPVESGYEVVLVGSSEVATVRQTH SHYFGIESYHNILESLDTSIVGFSRKIDIDIGARQILSTLHRRRFWGKKTVSVDTLSNHFCKSVLTFESSLRSLQERQLV QVSSLNGGISLNIHKKSEIEQYV >Mature_423_residues MYSKTKVDRAGLALAKDKYRDENEYFELEEVFDEYRKAHLQPLSETTLELQHLLSNYGAQYYIAQRLKRKPQIIRKLNRL SVRLTQLQDIGGCRIIVQKNSDVDRIHKYLIDKVNSQNVFTIDRTTDYRDLGRDYTGYRSLHVILKRGGVHLELQIRSRI QHYWSESIERTSVIYGYHLKEGEGDERVIGYFKNLSDVFYEIEAGREPSIDKRLKVDELRGECEQLIEQSDRYKVFDSFV NEDIIKTLTEKESKNSGGLNNWILVFDWNAGAFVSWDIVSRNPNDAVETYIEYEKMFPVESGYEVVLVGSSEVATVRQTH SHYFGIESYHNILESLDTSIVGFSRKIDIDIGARQILSTLHRRRFWGKKTVSVDTLSNHFCKSVLTFESSLRSLQERQLV QVSSLNGGISLNIHKKSEIEQYV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49280; Mature: 49280
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSKTKVDRAGLALAKDKYRDENEYFELEEVFDEYRKAHLQPLSETTLELQHLLSNYGAQ CCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH YYIAQRLKRKPQIIRKLNRLSVRLTQLQDIGGCRIIVQKNSDVDRIHKYLIDKVNSQNVF HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEE TIDRTTDYRDLGRDYTGYRSLHVILKRGGVHLELQIRSRIQHYWSESIERTSVIYGYHLK EEECCCCHHHHCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCEEEEEEEEC EGEGDERVIGYFKNLSDVFYEIEAGREPSIDKRLKVDELRGECEQLIEQSDRYKVFDSFV CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH NEDIIKTLTEKESKNSGGLNNWILVFDWNAGAFVSWDIVSRNPNDAVETYIEYEKMFPVE HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC SGYEVVLVGSSEVATVRQTHSHYFGIESYHNILESLDTSIVGFSRKIDIDIGARQILSTL CCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH HRRRFWGKKTVSVDTLSNHFCKSVLTFESSLRSLQERQLVQVSSLNGGISLNIHKKSEIE HHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHH QYV HCC >Mature Secondary Structure MYSKTKVDRAGLALAKDKYRDENEYFELEEVFDEYRKAHLQPLSETTLELQHLLSNYGAQ CCCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH YYIAQRLKRKPQIIRKLNRLSVRLTQLQDIGGCRIIVQKNSDVDRIHKYLIDKVNSQNVF HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEE TIDRTTDYRDLGRDYTGYRSLHVILKRGGVHLELQIRSRIQHYWSESIERTSVIYGYHLK EEECCCCHHHHCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCEEEEEEEEC EGEGDERVIGYFKNLSDVFYEIEAGREPSIDKRLKVDELRGECEQLIEQSDRYKVFDSFV CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH NEDIIKTLTEKESKNSGGLNNWILVFDWNAGAFVSWDIVSRNPNDAVETYIEYEKMFPVE HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC SGYEVVLVGSSEVATVRQTHSHYFGIESYHNILESLDTSIVGFSRKIDIDIGARQILSTL CCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH HRRRFWGKKTVSVDTLSNHFCKSVLTFESSLRSLQERQLVQVSSLNGGISLNIHKKSEIE HHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHH QYV HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA