Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689280
Identifier: 116689280
GI number: 116689280
Start: 1391476
End: 1392627
Strand: Reverse
Name: 116689280
Synonym: Bcen2424_1258
Alternate gene names: NA
Gene position: 1392627-1391476 (Counterclockwise)
Preceding gene: 116689281
Following gene: 116689278
Centisome position: 39.97
GC content: 71.61
Gene sequence:
>1152_bases ATGCACAACCGATTTCGCCTGTTTTCCGTTTCGTGCGCGCTCGCGGTCGCGACCGTGCTGGCGGCATGCTCGTCGCCGCC CAAGCCGATCTACCAGCAGGAACAGTTCGACGCGACCACCAGCCCGTATGCGCACACGTTCCACTCGAAATCCGACGCGG CCTGCGAGGCCGCGCGGCGCGCGCTGCTGAGCCAGGGCTACGTGGTGTCGTCGTCGCGCAACGACGCGGTCGACGGCAGC AAGAATTTCCAGCCGAGCAACGACATGCACGTCGTGATCGAGTTTCACGTCGTGTGCGCGGACGCGAATGCGGACGGCTC GTCGAGCATCGCGTACGTGAACGCGGTGCAGGACCGCTATACGCTGAAGAAGTCGAATACGTCGGCCAGCGTCGGCTTGA GCGTGTTCGGCTCGCTGTCGCTGCCGATCGGGTCGAGCGACGACGCGCTCGTCAAGACCGCGAGCGAGACGATTCCCGCC GGCGTGTTCTATGAGCGCTTCTTCACGCTCGTCGACCATTTCCTGAAGATCGACCCGGCGCGCCGCGACCGCGCAACCGT GAAGGCCGCCGAGAAGGAGCCCGTCGCGCCGCTGCCCGAGCCCGCGCCGACGCCGCAGGGCGAACCGCTGAAGATGACGA CGCCGGTCGTGCCGACGCCGCCCGCGGCGCCGGTGCCGCTTTCGGCGCCGGGGGTCGCGCCTGGATCGGGCGCGAATGCC GTGCCGGCCGCGGCATCGGCCGTGGCGGCGCCGGCCGCGATGCGGGCTGCCGCGCCGACGGCGGCGTCCGGGGCGGGGGC GGTTTCGGGGGCGGCCCCTGCGTCTGCACCTGCGCCGGCTTCGGCTGGCGGCTCGGCGCCTGCTCCCGCTTCGGCTGCTG CGCCCGCTTTGGCGCCTAAGCCGGTTTCCGGTCCGGTAACCGCACCGGCACCTTCATCGACCTCCGGTTCGACGGCCGCT CCGGCTTCCGCACCCGCGTCTGCTTCGGCTCCGGCGCCGGCCACCGCCACGCCGTCATCGCCCGCGCCCTCGTCTGCAGC ATCGACGCCCGCATCGGCCTCGGCGCCGTCGAGCGCATCGCCTGCGCCGGCTACAGCCAACCCGGTTGCATCGTCCACGC CGTCCGGCGCGAGCGCACCCGCCGCGAACTGA
Upstream 100 bases:
>100_bases AACGAAACTATAATGTCGCCCCGGCCATACGAGATGTGCGCGCGCATCAATCCGGGCACTCCCGTTGCGCCGCCTCTCGC CGAGCCTTCTGAAAGACGCC
Downstream 100 bases:
>100_bases CCGCGCTCCGGTATCGTCGCGCGCGCCCCCATGCGGCGTAGCGCGGCGGTACGCATACCTTCCGCATCATTCTCCGAGAC CCTTCCCGTTCATCCGGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein Transmembrane; Lipoprotein Protein; Large Tegument Domain-Containing Protein
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MHNRFRLFSVSCALAVATVLAACSSPPKPIYQQEQFDATTSPYAHTFHSKSDAACEAARRALLSQGYVVSSSRNDAVDGS KNFQPSNDMHVVIEFHVVCADANADGSSSIAYVNAVQDRYTLKKSNTSASVGLSVFGSLSLPIGSSDDALVKTASETIPA GVFYERFFTLVDHFLKIDPARRDRATVKAAEKEPVAPLPEPAPTPQGEPLKMTTPVVPTPPAAPVPLSAPGVAPGSGANA VPAAASAVAAPAAMRAAAPTAASGAGAVSGAAPASAPAPASAGGSAPAPASAAAPALAPKPVSGPVTAPAPSSTSGSTAA PASAPASASAPAPATATPSSPAPSSAASTPASASAPSSASPAPATANPVASSTPSGASAPAAN
Sequences:
>Translated_383_residues MHNRFRLFSVSCALAVATVLAACSSPPKPIYQQEQFDATTSPYAHTFHSKSDAACEAARRALLSQGYVVSSSRNDAVDGS KNFQPSNDMHVVIEFHVVCADANADGSSSIAYVNAVQDRYTLKKSNTSASVGLSVFGSLSLPIGSSDDALVKTASETIPA GVFYERFFTLVDHFLKIDPARRDRATVKAAEKEPVAPLPEPAPTPQGEPLKMTTPVVPTPPAAPVPLSAPGVAPGSGANA VPAAASAVAAPAAMRAAAPTAASGAGAVSGAAPASAPAPASAGGSAPAPASAAAPALAPKPVSGPVTAPAPSSTSGSTAA PASAPASASAPAPATATPSSPAPSSAASTPASASAPSSASPAPATANPVASSTPSGASAPAAN >Mature_383_residues MHNRFRLFSVSCALAVATVLAACSSPPKPIYQQEQFDATTSPYAHTFHSKSDAACEAARRALLSQGYVVSSSRNDAVDGS KNFQPSNDMHVVIEFHVVCADANADGSSSIAYVNAVQDRYTLKKSNTSASVGLSVFGSLSLPIGSSDDALVKTASETIPA GVFYERFFTLVDHFLKIDPARRDRATVKAAEKEPVAPLPEPAPTPQGEPLKMTTPVVPTPPAAPVPLSAPGVAPGSGANA VPAAASAVAAPAAMRAAAPTAASGAGAVSGAAPASAPAPASAGGSAPAPASAAAPALAPKPVSGPVTAPAPSSTSGSTAA PASAPASASAPAPATATPSSPAPSSAASTPASASAPSSASPAPATANPVASSTPSGASAPAAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37271; Mature: 37271
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHNRFRLFSVSCALAVATVLAACSSPPKPIYQQEQFDATTSPYAHTFHSKSDAACEAARR CCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHCCCCHHHHHHHHH ALLSQGYVVSSSRNDAVDGSKNFQPSNDMHVVIEFHVVCADANADGSSSIAYVNAVQDRY HHHHCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEHHHHH TLKKSNTSASVGLSVFGSLSLPIGSSDDALVKTASETIPAGVFYERFFTLVDHFLKIDPA EEECCCCCHHCCEEEEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC RRDRATVKAAEKEPVAPLPEPAPTPQGEPLKMTTPVVPTPPAAPVPLSAPGVAPGSGANA CCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC VPAAASAVAAPAAMRAAAPTAASGAGAVSGAAPASAPAPASAGGSAPAPASAAAPALAPK CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PVSGPVTAPAPSSTSGSTAAPASAPASASAPAPATATPSSPAPSSAASTPASASAPSSAS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PAPATANPVASSTPSGASAPAAN CCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHNRFRLFSVSCALAVATVLAACSSPPKPIYQQEQFDATTSPYAHTFHSKSDAACEAARR CCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHCCCCHHHHHHHHH ALLSQGYVVSSSRNDAVDGSKNFQPSNDMHVVIEFHVVCADANADGSSSIAYVNAVQDRY HHHHCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEHHHHH TLKKSNTSASVGLSVFGSLSLPIGSSDDALVKTASETIPAGVFYERFFTLVDHFLKIDPA EEECCCCCHHCCEEEEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC RRDRATVKAAEKEPVAPLPEPAPTPQGEPLKMTTPVVPTPPAAPVPLSAPGVAPGSGANA CCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC VPAAASAVAAPAAMRAAAPTAASGAGAVSGAAPASAPAPASAGGSAPAPASAAAPALAPK CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PVSGPVTAPAPSSTSGSTAAPASAPASASAPAPATATPSSPAPSSAASTPASASAPSSAS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PAPATANPVASSTPSGASAPAAN CCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA