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The map label for this gene is yagH [C]

Identifier: 116622106

GI number: 116622106

Start: 3786491

End: 3788599

Strand: Direct

Name: yagH [C]

Synonym: Acid_2993

Alternate gene names: 116622106

Gene position: 3786491-3788599 (Clockwise)

Preceding gene: 116622105

Following gene: 116622107

Centisome position: 38.0

GC content: 60.88

Gene sequence:

>2109_bases
TTGATCTCAAATAAGCACATGAGCAGGGTCATGTTTCGCCTGGCGGTGTTGCTTGCCGCGTACACCGTTGCGCCGGGTGC
CGACTCGCGTGCAGTCCACCGGTCCTGGGCGGCCGACAATGGGAACGGCACCTATTCCAATCCTCTGTTCTATGACGAGT
TCTCCGACCCGGACATGATCCGCGTCGGGTCCGATTACTACCTGACCGCTACCACGATGCATGCCATGCCTGGCCTGCCG
ATCCTGCACTCGCGCGACCTGGTGAACTGGCGCTGGATCGCCTATGCCTTCGATCGCCTGGATCTTGGGCCCGACTTCCA
TCTCGAGGGTGGGAAGGAGATCTATGGACAGGGGATTTGGGCGCCGAGTTTCCGCTATAACAAGGGCAAGTATTACATCT
TTGCCAATGTGAATCGTTTCGGCCTGCAGGTCTTTCGGGCTTCCGATCCACGCGGCCCGTGGCAGCACAACAGAATCGAC
CGGGGGCTGCACGATCTCTCCGTGCTGTTCGACGATGACGGCAAGATCTACGCCGTGTATGGCGCGCGCACCATCCACAT
CGTCGAGCTCAATGCGGAGCTGACGGGACTTGTGCCCGATACCGATCGGGTCCTCATCGGATCGGAGCTCGGAATGGGAG
AGGGGGCGCATGTCTACAAGCTAAGGGGGCGATACTACATTGTGAGCGCGATCCCAGGCGCCCACGTGCCGATGAAATGC
GCACGGGCCGAACAGCTCAAGGGGCCTTGGGAAGTTCAGACCATCAGCGAGGGTGAGAGTCTGGGAATCGGCCAGAGTTA
CCGGCTGCGGACGCAGAGACAATACGCACCACCCTTCGAGATTTTGCCGTCGAATCCGGAGGAGCGTGCCAGCCTCACTC
TGCATCAGGGCGGCATCGTCGATACCGCCAACGGCGAATGGTGGGGCTTCTCCATGCAGGACCACAACTCCGTGGGGCGC
CTGACGAGCCTTTCGCCGGTGACGTGGGTCGATGAGTGGCCGTACTTTGGCCTCCCTGGTAATCTGAGGCGCTCGCCATC
GACTTGGGTGAAGCCAAGTACCGGACATCTAGAGCAAGTGAGCTCTTCATATGATCGCAGCGACGATTTTTCCAAGCCGA
AGCTGCAGCCGGTTTGGCAATGGAATCATCTGCCGGATGACACGAAGTGGTCGCTCACGGAGCGTCCGGGGTATCTGCGT
CTGCATTCCCTTCCTTCGTCCGACTTTTGGTGGGCGCGGAATTCGCTGACCCAGCGGGCGATCGGCCCCGAGTCCTCGGC
GACCACTGAGCTGGATACGGCTGGCATGAAGCCGGGTGACGTCGCCGGCCTGGCGCTGTTGAACCTGCCGTACGCATGGA
TCGGCGTGAAGCGCGATGGCGATGGATTCTCGCTCGAACAATTCGATCAGGCTACAGGCAAGTCAATGCGCGAGCCCATC
CAACAGTCGCGATTGCGCCTTCGCGTGCACTGCGATTTCGATACCGATCTCGCACAGTTCAGCTATAGTCTGGACGGCGT
GAAATTCATCTCAATCGGCGGCGAGTTAAAACTGCCGTTCCAACTGAAGACCTTTCAAGGCGTTCGCTATGCACTCTTCC
ACTACAATGCCGCCGGCAGTCCTGGAGGGCAGGCCGATTTTGATGAATTTGTGGTGGACGAGCCGCGCCCTCGGGGCCTG
ACCAAGCCGATTCCATACGGCAAGGAGATCGAATTCGAAGATCTGTCCAACGGCAACGGCCTGGCGTTGGCTGGTGGCAT
CATGCAGTCGATTACGAGAGCCGGTGGGGCGACGGCGTTCCGGGTAGTGGACCGCGGGCGCGGACGCGTTGCGCTCGAGA
CGAAATCCGGGCAATATCTCACGGTTAAAGGCTCTGGCAAGGCGGGCCAGGTTGGCGTCTCCGCCGGCAAGCCGGGCGAC
GCGGAGACGTTTCAGTGGGTGGACCTGCAGCGCGGCGACACACTGCTCCTCTCGCTTGCCACGCACCGTTACATCGTGGC
GCCGAACTCTCCGGGCCCGCTCGCGGCAGACCACCCCGGACCGGCGCCTGATCGGAAGGATGGTTCCTGTTTCAGGTGGC
GGCAGGTGGCTGGACGGAGGCAAAGATGA

Upstream 100 bases:

>100_bases
GCACAGCCCGAGCGCATCGTTCCGGTGAAGTCCACCGCGTCCATCAAGGACGAGCACATACAGCACGTGATGCCGGGATA
TTCGATTCAGGTTATCGAGC

Downstream 100 bases:

>100_bases
CCATGAAGACTACACTTTGCACGATCATTATCGCGTTCACTGTGGCGGCGGTTGCGCAGGTGAAGACCGAGGTGCCTGAC
GTTGTGCCGGGCGCCAAGCC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 702; Mature: 702

Protein sequence:

>702_residues
MISNKHMSRVMFRLAVLLAAYTVAPGADSRAVHRSWAADNGNGTYSNPLFYDEFSDPDMIRVGSDYYLTATTMHAMPGLP
ILHSRDLVNWRWIAYAFDRLDLGPDFHLEGGKEIYGQGIWAPSFRYNKGKYYIFANVNRFGLQVFRASDPRGPWQHNRID
RGLHDLSVLFDDDGKIYAVYGARTIHIVELNAELTGLVPDTDRVLIGSELGMGEGAHVYKLRGRYYIVSAIPGAHVPMKC
ARAEQLKGPWEVQTISEGESLGIGQSYRLRTQRQYAPPFEILPSNPEERASLTLHQGGIVDTANGEWWGFSMQDHNSVGR
LTSLSPVTWVDEWPYFGLPGNLRRSPSTWVKPSTGHLEQVSSSYDRSDDFSKPKLQPVWQWNHLPDDTKWSLTERPGYLR
LHSLPSSDFWWARNSLTQRAIGPESSATTELDTAGMKPGDVAGLALLNLPYAWIGVKRDGDGFSLEQFDQATGKSMREPI
QQSRLRLRVHCDFDTDLAQFSYSLDGVKFISIGGELKLPFQLKTFQGVRYALFHYNAAGSPGGQADFDEFVVDEPRPRGL
TKPIPYGKEIEFEDLSNGNGLALAGGIMQSITRAGGATAFRVVDRGRGRVALETKSGQYLTVKGSGKAGQVGVSAGKPGD
AETFQWVDLQRGDTLLLSLATHRYIVAPNSPGPLAADHPGPAPDRKDGSCFRWRQVAGRRQR

Sequences:

>Translated_702_residues
MISNKHMSRVMFRLAVLLAAYTVAPGADSRAVHRSWAADNGNGTYSNPLFYDEFSDPDMIRVGSDYYLTATTMHAMPGLP
ILHSRDLVNWRWIAYAFDRLDLGPDFHLEGGKEIYGQGIWAPSFRYNKGKYYIFANVNRFGLQVFRASDPRGPWQHNRID
RGLHDLSVLFDDDGKIYAVYGARTIHIVELNAELTGLVPDTDRVLIGSELGMGEGAHVYKLRGRYYIVSAIPGAHVPMKC
ARAEQLKGPWEVQTISEGESLGIGQSYRLRTQRQYAPPFEILPSNPEERASLTLHQGGIVDTANGEWWGFSMQDHNSVGR
LTSLSPVTWVDEWPYFGLPGNLRRSPSTWVKPSTGHLEQVSSSYDRSDDFSKPKLQPVWQWNHLPDDTKWSLTERPGYLR
LHSLPSSDFWWARNSLTQRAIGPESSATTELDTAGMKPGDVAGLALLNLPYAWIGVKRDGDGFSLEQFDQATGKSMREPI
QQSRLRLRVHCDFDTDLAQFSYSLDGVKFISIGGELKLPFQLKTFQGVRYALFHYNAAGSPGGQADFDEFVVDEPRPRGL
TKPIPYGKEIEFEDLSNGNGLALAGGIMQSITRAGGATAFRVVDRGRGRVALETKSGQYLTVKGSGKAGQVGVSAGKPGD
AETFQWVDLQRGDTLLLSLATHRYIVAPNSPGPLAADHPGPAPDRKDGSCFRWRQVAGRRQR
>Mature_702_residues
MISNKHMSRVMFRLAVLLAAYTVAPGADSRAVHRSWAADNGNGTYSNPLFYDEFSDPDMIRVGSDYYLTATTMHAMPGLP
ILHSRDLVNWRWIAYAFDRLDLGPDFHLEGGKEIYGQGIWAPSFRYNKGKYYIFANVNRFGLQVFRASDPRGPWQHNRID
RGLHDLSVLFDDDGKIYAVYGARTIHIVELNAELTGLVPDTDRVLIGSELGMGEGAHVYKLRGRYYIVSAIPGAHVPMKC
ARAEQLKGPWEVQTISEGESLGIGQSYRLRTQRQYAPPFEILPSNPEERASLTLHQGGIVDTANGEWWGFSMQDHNSVGR
LTSLSPVTWVDEWPYFGLPGNLRRSPSTWVKPSTGHLEQVSSSYDRSDDFSKPKLQPVWQWNHLPDDTKWSLTERPGYLR
LHSLPSSDFWWARNSLTQRAIGPESSATTELDTAGMKPGDVAGLALLNLPYAWIGVKRDGDGFSLEQFDQATGKSMREPI
QQSRLRLRVHCDFDTDLAQFSYSLDGVKFISIGGELKLPFQLKTFQGVRYALFHYNAAGSPGGQADFDEFVVDEPRPRGL
TKPIPYGKEIEFEDLSNGNGLALAGGIMQSITRAGGATAFRVVDRGRGRVALETKSGQYLTVKGSGKAGQVGVSAGKPGD
AETFQWVDLQRGDTLLLSLATHRYIVAPNSPGPLAADHPGPAPDRKDGSCFRWRQVAGRRQR

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=565, Percent_Identity=24.4247787610619, Blast_Score=129, Evalue=8e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 78071; Mature: 78071

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISNKHMSRVMFRLAVLLAAYTVAPGADSRAVHRSWAADNGNGTYSNPLFYDEFSDPDMI
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCEEECCCCCCCEE
RVGSDYYLTATTMHAMPGLPILHSRDLVNWRWIAYAFDRLDLGPDFHLEGGKEIYGQGIW
EECCCEEEEEEEHHHCCCCCEEECCCCCCEEEEEEEEECCCCCCCEECCCCCEECCCCCC
APSFRYNKGKYYIFANVNRFGLQVFRASDPRGPWQHNRIDRGLHDLSVLFDDDGKIYAVY
CCCEEECCCCEEEEEECCCEEEEEEECCCCCCCCCCCHHHCCCCEEEEEECCCCCEEEEE
GARTIHIVELNAELTGLVPDTDRVLIGSELGMGEGAHVYKLRGRYYIVSAIPGAHVPMKC
CCEEEEEEEECCEEEECCCCCCCEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCHHH
ARAEQLKGPWEVQTISEGESLGIGQSYRLRTQRQYAPPFEILPSNPEERASLTLHQGGIV
HHHHHCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCEECCCCCHHHCEEEEECCCEE
DTANGEWWGFSMQDHNSVGRLTSLSPVTWVDEWPYFGLPGNLRRSPSTWVKPSTGHLEQV
ECCCCCEEEEECCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
SSSYDRSDDFSKPKLQPVWQWNHLPDDTKWSLTERPGYLRLHSLPSSDFWWARNSLTQRA
HHHCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEECCCCCCCEEHHHCHHHHC
IGPESSATTELDTAGMKPGDVAGLALLNLPYAWIGVKRDGDGFSLEQFDQATGKSMREPI
CCCCCCCCCCHHHCCCCCCCHHEEHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
QQSRLRLRVHCDFDTDLAQFSYSLDGVKFISIGGELKLPFQLKTFQGVRYALFHYNAAGS
HHCCEEEEEEECCCCCHHHHEECCCCEEEEEECCEEEEEEEEECCCCEEEEEEEECCCCC
PGGQADFDEFVVDEPRPRGLTKPIPYGKEIEFEDLSNGNGLALAGGIMQSITRAGGATAF
CCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEHHCCCCCCCEEEEHHHHHHHHHCCCCEEE
RVVDRGRGRVALETKSGQYLTVKGSGKAGQVGVSAGKPGDAETFQWVDLQRGDTLLLSLA
EEEECCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEEE
THRYIVAPNSPGPLAADHPGPAPDRKDGSCFRWRQVAGRRQR
CCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MISNKHMSRVMFRLAVLLAAYTVAPGADSRAVHRSWAADNGNGTYSNPLFYDEFSDPDMI
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCEEECCCCCCCEE
RVGSDYYLTATTMHAMPGLPILHSRDLVNWRWIAYAFDRLDLGPDFHLEGGKEIYGQGIW
EECCCEEEEEEEHHHCCCCCEEECCCCCCEEEEEEEEECCCCCCCEECCCCCEECCCCCC
APSFRYNKGKYYIFANVNRFGLQVFRASDPRGPWQHNRIDRGLHDLSVLFDDDGKIYAVY
CCCEEECCCCEEEEEECCCEEEEEEECCCCCCCCCCCHHHCCCCEEEEEECCCCCEEEEE
GARTIHIVELNAELTGLVPDTDRVLIGSELGMGEGAHVYKLRGRYYIVSAIPGAHVPMKC
CCEEEEEEEECCEEEECCCCCCCEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCCHHH
ARAEQLKGPWEVQTISEGESLGIGQSYRLRTQRQYAPPFEILPSNPEERASLTLHQGGIV
HHHHHCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCEECCCCCHHHCEEEEECCCEE
DTANGEWWGFSMQDHNSVGRLTSLSPVTWVDEWPYFGLPGNLRRSPSTWVKPSTGHLEQV
ECCCCCEEEEECCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
SSSYDRSDDFSKPKLQPVWQWNHLPDDTKWSLTERPGYLRLHSLPSSDFWWARNSLTQRA
HHHCCCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCEEEEECCCCCCCEEHHHCHHHHC
IGPESSATTELDTAGMKPGDVAGLALLNLPYAWIGVKRDGDGFSLEQFDQATGKSMREPI
CCCCCCCCCCHHHCCCCCCCHHEEHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH
QQSRLRLRVHCDFDTDLAQFSYSLDGVKFISIGGELKLPFQLKTFQGVRYALFHYNAAGS
HHCCEEEEEEECCCCCHHHHEECCCCEEEEEECCEEEEEEEEECCCCEEEEEEEECCCCC
PGGQADFDEFVVDEPRPRGLTKPIPYGKEIEFEDLSNGNGLALAGGIMQSITRAGGATAF
CCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEHHCCCCCCCEEEEHHHHHHHHHCCCCEEE
RVVDRGRGRVALETKSGQYLTVKGSGKAGQVGVSAGKPGDAETFQWVDLQRGDTLLLSLA
EEEECCCCEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEEE
THRYIVAPNSPGPLAADHPGPAPDRKDGSCFRWRQVAGRRQR
CCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA