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The map label for this gene is abnA [H]

Identifier: 116622102

GI number: 116622102

Start: 3779973

End: 3781472

Strand: Direct

Name: abnA [H]

Synonym: Acid_2989

Alternate gene names: 116622102

Gene position: 3779973-3781472 (Clockwise)

Preceding gene: 116622101

Following gene: 116622103

Centisome position: 37.93

GC content: 64.07

Gene sequence:

>1500_bases
ATGAAGTACGCTCTCGCGGCCACACTCCTCGCGCTGGTGTCGATCGCCCTGGCGCTCGACGGCCAAATCGGAATTCACGA
CCCATCGACCATTGCGCTGTGCAACGGAAAGTTTTACACATATGGGACGGGCGGCTCGTCGCTGGTTTCCGACGACGGGT
GGACGTGGCGCCGCGGTACGCCGCTCCCCCGTCGCGGGTTGGCGCCGGACATCATCCACATCGGCGACCGCTACTATGTC
TATGTCGCTGCTAATATTGGGGCTCAGCCCAAGGCCGCGGTCAACATGATCTGGAATAAGACGCTCGACCCCGACTCGCC
GGACTATAAGTGGGAAGAGGGCGGAGTGGTCGCATCGTCGGATGGCGTCGAAGATTCGAATGCAATCGATCCCGGCGTGT
TTCTGGATCCAAACGACGGCCGTCTTTGGCTCGTGTACGGCTCCTATTTTGGCTATATCCGGTTGGTCGAACTCGATCCA
AAAACGGGTAGGCGCCTCAACCTTAGCGACACGCCCCGCAACCTTGCCGTCAACTGCGAGGCCTCGGACATGATCTATCA
TGACGACTGGTATTACCTGCTGGCCACTCACGGCAGTTGCTGCCGCGGGGCGGATTCCGGCTACAACATCCGTATGGGCC
GCTCCAAGAAGGTGACCGGGCCCTACCTCGACCACGAAGGTATCGACATGATTCAGGGCGGGGGCAAGTTGTTGGTTGGC
TCCGCCGGCCGCGCGATCGGGCCCGGCCACTTCGGTCTGCTCGATCTTGGCGATGGTGTGCAGCGATTCTCGCTGCATTA
CGAGGCCGATCTGGACCGCGGGGGCGCCAGCGTGCTCGATATCAAGCCGCTGCTGTGGAAGGACGGCTGGCCCCTGGCCG
GTGAGAATCTGAAGGAGGGGACGTACCAGATCGAGTCCGCGAGGACGGGAACCGCGCTGGAACTCGCCGTCGAGCGCATG
CCGGTCGGCGGACGCGTGGGTCGCGGCGGCCGGGGGGGAGGAACCGCCCCGGGTGGCGGCCGGGAAGGTGCGGCGCAGCC
CGGCAGTACCGGAGCAGGGCGCGGAATGTTCGCGGGCACAGGTTCGCCGATCCCGCCGCAGGACGCCGCCCAAATATCGG
CGCAGTGGCCCGCGGGCAACATCGGGGTCCGCATGGCGAACTATCTCTGCCAGGCGCAGCAGAAGTGGATGATCGCCGCA
GTTCCGGATGCGGGCGGCTATCCCGGTTCGCCGTATTTCAAGATTACGGTCGCGGGCACCGGTCGTATTCTCGCGGCAAC
CGCGGACGCGGAACTGGTAGTGTTGCCCGCGTTCACGGCGGCGCCCGAGCAGCTTTGGCGAATCGAACAGTTTCCTGACG
GCACATGGCGCATCAGGCCCAAAGCGGCGCCCAATTCCAATCAAGCGCTGGCACTTTCGGCCGTGGGCAGCAGCTACGCC
ACCCTGGCCAAATTGGATGCCGCCAGCGAAAAGCAGCGGTGGCTGATCAAGACGCCATGA

Upstream 100 bases:

>100_bases
TATCCACAACGTCTATTTCGAGTCGCCCGGCACCGCTCATGAGTGGCTGACCTGGCGCCGCTGCCTCAACGATTTCGCGC
CGCGGCTATTCAAATAACTT

Downstream 100 bases:

>100_bases
GGATTCATCGAAAAGCAATTGCCGCCGTTTGGGCTCTCGCCGCCGTTGCCACGGCGCAGGTCGCTCCCGTCACGCTCACG
GCTCCTGCTTCACCCCAACA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 499; Mature: 499

Protein sequence:

>499_residues
MKYALAATLLALVSIALALDGQIGIHDPSTIALCNGKFYTYGTGGSSLVSDDGWTWRRGTPLPRRGLAPDIIHIGDRYYV
YVAANIGAQPKAAVNMIWNKTLDPDSPDYKWEEGGVVASSDGVEDSNAIDPGVFLDPNDGRLWLVYGSYFGYIRLVELDP
KTGRRLNLSDTPRNLAVNCEASDMIYHDDWYYLLATHGSCCRGADSGYNIRMGRSKKVTGPYLDHEGIDMIQGGGKLLVG
SAGRAIGPGHFGLLDLGDGVQRFSLHYEADLDRGGASVLDIKPLLWKDGWPLAGENLKEGTYQIESARTGTALELAVERM
PVGGRVGRGGRGGGTAPGGGREGAAQPGSTGAGRGMFAGTGSPIPPQDAAQISAQWPAGNIGVRMANYLCQAQQKWMIAA
VPDAGGYPGSPYFKITVAGTGRILAATADAELVVLPAFTAAPEQLWRIEQFPDGTWRIRPKAAPNSNQALALSAVGSSYA
TLAKLDAASEKQRWLIKTP

Sequences:

>Translated_499_residues
MKYALAATLLALVSIALALDGQIGIHDPSTIALCNGKFYTYGTGGSSLVSDDGWTWRRGTPLPRRGLAPDIIHIGDRYYV
YVAANIGAQPKAAVNMIWNKTLDPDSPDYKWEEGGVVASSDGVEDSNAIDPGVFLDPNDGRLWLVYGSYFGYIRLVELDP
KTGRRLNLSDTPRNLAVNCEASDMIYHDDWYYLLATHGSCCRGADSGYNIRMGRSKKVTGPYLDHEGIDMIQGGGKLLVG
SAGRAIGPGHFGLLDLGDGVQRFSLHYEADLDRGGASVLDIKPLLWKDGWPLAGENLKEGTYQIESARTGTALELAVERM
PVGGRVGRGGRGGGTAPGGGREGAAQPGSTGAGRGMFAGTGSPIPPQDAAQISAQWPAGNIGVRMANYLCQAQQKWMIAA
VPDAGGYPGSPYFKITVAGTGRILAATADAELVVLPAFTAAPEQLWRIEQFPDGTWRIRPKAAPNSNQALALSAVGSSYA
TLAKLDAASEKQRWLIKTP
>Mature_499_residues
MKYALAATLLALVSIALALDGQIGIHDPSTIALCNGKFYTYGTGGSSLVSDDGWTWRRGTPLPRRGLAPDIIHIGDRYYV
YVAANIGAQPKAAVNMIWNKTLDPDSPDYKWEEGGVVASSDGVEDSNAIDPGVFLDPNDGRLWLVYGSYFGYIRLVELDP
KTGRRLNLSDTPRNLAVNCEASDMIYHDDWYYLLATHGSCCRGADSGYNIRMGRSKKVTGPYLDHEGIDMIQGGGKLLVG
SAGRAIGPGHFGLLDLGDGVQRFSLHYEADLDRGGASVLDIKPLLWKDGWPLAGENLKEGTYQIESARTGTALELAVERM
PVGGRVGRGGRGGGTAPGGGREGAAQPGSTGAGRGMFAGTGSPIPPQDAAQISAQWPAGNIGVRMANYLCQAQQKWMIAA
VPDAGGYPGSPYFKITVAGTGRILAATADAELVVLPAFTAAPEQLWRIEQFPDGTWRIRPKAAPNSNQALALSAVGSSYA
TLAKLDAASEKQRWLIKTP

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 53054; Mature: 53054

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYALAATLLALVSIALALDGQIGIHDPSTIALCNGKFYTYGTGGSSLVSDDGWTWRRGT
CCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCEEEEECCCCCCEECCCCCEECCCC
PLPRRGLAPDIIHIGDRYYVYVAANIGAQPKAAVNMIWNKTLDPDSPDYKWEEGGVVASS
CCCCCCCCCCEEEECCEEEEEEEECCCCCCCHHHHEEECCCCCCCCCCCEECCCCEEEEC
DGVEDSNAIDPGVFLDPNDGRLWLVYGSYFGYIRLVELDPKTGRRLNLSDTPRNLAVNCE
CCCCCCCCCCCCCEEECCCCEEEEEEECCCCEEEEEEECCCCCCEEECCCCCCCEEEEEC
ASDMIYHDDWYYLLATHGSCCRGADSGYNIRMGRSKKVTGPYLDHEGIDMIQGGGKLLVG
CCCEEEECCEEEEEEECCCHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCEEEEE
SAGRAIGPGHFGLLDLGDGVQRFSLHYEADLDRGGASVLDIKPLLWKDGWPLAGENLKEG
CCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCEEEEECCEEECCCCCCCCCCCCCC
TYQIESARTGTALELAVERMPVGGRVGRGGRGGGTAPGGGREGAAQPGSTGAGRGMFAGT
EEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
GSPIPPQDAAQISAQWPAGNIGVRMANYLCQAQQKWMIAAVPDAGGYPGSPYFKITVAGT
CCCCCCCHHHEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECC
GRILAATADAELVVLPAFTAAPEQLWRIEQFPDGTWRIRPKAAPNSNQALALSAVGSSYA
CEEEEEECCCCEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEECCCCHH
TLAKLDAASEKQRWLIKTP
HHHHHCCCCCCCCEEEECC
>Mature Secondary Structure
MKYALAATLLALVSIALALDGQIGIHDPSTIALCNGKFYTYGTGGSSLVSDDGWTWRRGT
CCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCEEEEECCCCCCEECCCCCEECCCC
PLPRRGLAPDIIHIGDRYYVYVAANIGAQPKAAVNMIWNKTLDPDSPDYKWEEGGVVASS
CCCCCCCCCCEEEECCEEEEEEEECCCCCCCHHHHEEECCCCCCCCCCCEECCCCEEEEC
DGVEDSNAIDPGVFLDPNDGRLWLVYGSYFGYIRLVELDPKTGRRLNLSDTPRNLAVNCE
CCCCCCCCCCCCCEEECCCCEEEEEEECCCCEEEEEEECCCCCCEEECCCCCCCEEEEEC
ASDMIYHDDWYYLLATHGSCCRGADSGYNIRMGRSKKVTGPYLDHEGIDMIQGGGKLLVG
CCCEEEECCEEEEEEECCCHHCCCCCCCEEEECCCCCCCCCCCCCCCCEEEECCCEEEEE
SAGRAIGPGHFGLLDLGDGVQRFSLHYEADLDRGGASVLDIKPLLWKDGWPLAGENLKEG
CCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCEEEEECCEEECCCCCCCCCCCCCC
TYQIESARTGTALELAVERMPVGGRVGRGGRGGGTAPGGGREGAAQPGSTGAGRGMFAGT
EEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
GSPIPPQDAAQISAQWPAGNIGVRMANYLCQAQQKWMIAAVPDAGGYPGSPYFKITVAGT
CCCCCCCHHHEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECC
GRILAATADAELVVLPAFTAAPEQLWRIEQFPDGTWRIRPKAAPNSNQALALSAVGSSYA
CEEEEEECCCCEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEECCCCHH
TLAKLDAASEKQRWLIKTP
HHHHHCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]