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The map label for this gene is ykgB [H]

Identifier: 116621898

GI number: 116621898

Start: 3526912

End: 3527820

Strand: Reverse

Name: ykgB [H]

Synonym: Acid_2783

Alternate gene names: 116621898

Gene position: 3527820-3526912 (Counterclockwise)

Preceding gene: 116621900

Following gene: 116621895

Centisome position: 35.4

GC content: 63.37

Gene sequence:

>909_bases
GTGAGCGCGTATGAGATCGAGCGCCCCAGCGGACAGCTGAGGCTGATGAACACGGTCGCATCGGAAGACGCGGGTCCGTG
CCACCTGAGCCTTCATCAGTCCGGCAAATGGGCCTTGGTGGCGAATTACCACGGTGGAACCTCGGCGGTGCTGCCGCTCG
GCTCCAACGGCGAAGTCGGCAGGGCCACCGACGTCAAACGCCACGAGGGTGTTCTCGGCCCCCGCCACGCTGCCGGCGCG
CCTCCGGGCAGCTTTGCCTGGAGCGGCCACGACGGCCCGCACTCGCACATGATCCAGCCGGACCCGTCCGGCCGCTTCGT
GCTGGCCGCGGGTCTCGGACTTGATCGGATCCTAGTCTGGAAATTCGACGCCATCTCGGGCAAATTAGCGGTCAACGATC
GGCCGTCCGTTGCTTTCCCGCCAGGCGACGGCCCGCGACATTTCGTATTTCATCCGAATGGGCGGCTGCTCTATTCACTC
CAGGAGGAAGGCTCTACGCTGGTGACCCTCGATTACGATGGCGCCACCGGACGCTTGACGGCGAAGCAAACTATCTCCTC
GCTGCCACTCGGCTTTGTGGGCACCAACTTTGCCTCCGATGTTGCCATATCTCCCGATGCGCGCTTTGTCTATGCCGCCA
ACCGGCTGCACGACACCATTGCCTGGTTTGCGGTCGCAGCCCACGGAACGCTGCACTTCACCGGTGAAGAACCCACCCGC
GGCGACCATCCGCGCTTTTTCACCTTCGATCCTTCCGGAAAACTCGTATACTCCTGCAACCAGCGCGCGGGCGCAATCGT
ATCCTTCCTCGTGAACCGGAAGACAGGCGCGCTTTCCCACACAGGCCAATGCACTCCCCTTGGCACGCCGTCTTTCCTCG
CATTTCTCCGGGACGCTGGACGAGCGTGA

Upstream 100 bases:

>100_bases
GAACGCGGCCAATCCGTCATGTCTGGCGCTGAACGCTTCCGGGACGCGTCTTTATTCGGCAAACGAAACGTCCACGTACG
AAGGCTCCCCCAGCGGTTCC

Downstream 100 bases:

>100_bases
TGATCACCGTAAAATCCGGCACCACGCCGCACGGACGCCGCACCGGCTGCCATCAGGGCGGAAACGAAACACCGGGCTCG
ACCGGTCACAAGCACTTTCA

Product: putative cycloisomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSAYEIERPSGQLRLMNTVASEDAGPCHLSLHQSGKWALVANYHGGTSAVLPLGSNGEVGRATDVKRHEGVLGPRHAAGA
PPGSFAWSGHDGPHSHMIQPDPSGRFVLAAGLGLDRILVWKFDAISGKLAVNDRPSVAFPPGDGPRHFVFHPNGRLLYSL
QEEGSTLVTLDYDGATGRLTAKQTISSLPLGFVGTNFASDVAISPDARFVYAANRLHDTIAWFAVAAHGTLHFTGEEPTR
GDHPRFFTFDPSGKLVYSCNQRAGAIVSFLVNRKTGALSHTGQCTPLGTPSFLAFLRDAGRA

Sequences:

>Translated_302_residues
MSAYEIERPSGQLRLMNTVASEDAGPCHLSLHQSGKWALVANYHGGTSAVLPLGSNGEVGRATDVKRHEGVLGPRHAAGA
PPGSFAWSGHDGPHSHMIQPDPSGRFVLAAGLGLDRILVWKFDAISGKLAVNDRPSVAFPPGDGPRHFVFHPNGRLLYSL
QEEGSTLVTLDYDGATGRLTAKQTISSLPLGFVGTNFASDVAISPDARFVYAANRLHDTIAWFAVAAHGTLHFTGEEPTR
GDHPRFFTFDPSGKLVYSCNQRAGAIVSFLVNRKTGALSHTGQCTPLGTPSFLAFLRDAGRA
>Mature_301_residues
SAYEIERPSGQLRLMNTVASEDAGPCHLSLHQSGKWALVANYHGGTSAVLPLGSNGEVGRATDVKRHEGVLGPRHAAGAP
PGSFAWSGHDGPHSHMIQPDPSGRFVLAAGLGLDRILVWKFDAISGKLAVNDRPSVAFPPGDGPRHFVFHPNGRLLYSLQ
EEGSTLVTLDYDGATGRLTAKQTISSLPLGFVGTNFASDVAISPDARFVYAANRLHDTIAWFAVAAHGTLHFTGEEPTRG
DHPRFFTFDPSGKLVYSCNQRAGAIVSFLVNRKTGALSHTGQCTPLGTPSFLAFLRDAGRA

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=285, Percent_Identity=30.1754385964912, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 32158; Mature: 32027

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAYEIERPSGQLRLMNTVASEDAGPCHLSLHQSGKWALVANYHGGTSAVLPLGSNGEVG
CCCEEECCCCCCEEEEEEHHCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCC
RATDVKRHEGVLGPRHAAGAPPGSFAWSGHDGPHSHMIQPDPSGRFVLAAGLGLDRILVW
CCCCCHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE
KFDAISGKLAVNDRPSVAFPPGDGPRHFVFHPNGRLLYSLQEEGSTLVTLDYDGATGRLT
EEECCCCEEEECCCCCEEECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCEEE
AKQTISSLPLGFVGTNFASDVAISPDARFVYAANRLHDTIAWFAVAAHGTLHFTGEEPTR
HHHHHHHCCCCEEECCCCCCEEECCCCEEEEEHHHHHHHHEEEEEEECCEEEECCCCCCC
GDHPRFFTFDPSGKLVYSCNQRAGAIVSFLVNRKTGALSHTGQCTPLGTPSFLAFLRDAG
CCCCEEEEECCCCCEEEECCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
RA
CC
>Mature Secondary Structure 
SAYEIERPSGQLRLMNTVASEDAGPCHLSLHQSGKWALVANYHGGTSAVLPLGSNGEVG
CCEEECCCCCCEEEEEEHHCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEECCCCCCC
RATDVKRHEGVLGPRHAAGAPPGSFAWSGHDGPHSHMIQPDPSGRFVLAAGLGLDRILVW
CCCCCHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE
KFDAISGKLAVNDRPSVAFPPGDGPRHFVFHPNGRLLYSLQEEGSTLVTLDYDGATGRLT
EEECCCCEEEECCCCCEEECCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCEEE
AKQTISSLPLGFVGTNFASDVAISPDARFVYAANRLHDTIAWFAVAAHGTLHFTGEEPTR
HHHHHHHCCCCEEECCCCCCEEECCCCEEEEEHHHHHHHHEEEEEEECCEEEECCCCCCC
GDHPRFFTFDPSGKLVYSCNQRAGAIVSFLVNRKTGALSHTGQCTPLGTPSFLAFLRDAG
CCCCEEEEECCCCCEEEECCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHCC
RA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]