Click here to switch to the map view.

The map label for this gene is atpD

Identifier: 116619604

GI number: 116619604

Start: 569333

End: 570781

Strand: Direct

Name: atpD

Synonym: Acid_0465

Alternate gene names: 116619604

Gene position: 569333-570781 (Clockwise)

Preceding gene: 116619603

Following gene: 116619605

Centisome position: 5.71

GC content: 61.28

Gene sequence:

>1449_bases
ATGGTAACGACCAACGTGGTAACCGGCAAAGTAGTCGTGGTGTCCGGTCCGGCCGTGGATTGCGAATTTCCCGAGGGACA
GATTCCCCCGGTGCATACGGCGATCCGGATCATCAGCGAGGGTTTCGACATTCCGACGCCGATCGATATCATCTGCGAAG
TGCAGCAGCACATCGGTGAAGGGCGCGTGCGTACCATCGCGCTGCAGCCCACCGAAGGGCTGGTTCGCGGCATGCAGGCA
ATCAGCCTGGGCCACCCGGTGGAAGTGCCGGTGGGTCCGGAAACGTTGGGCCGCGTGCTCAACGTTATCGGCGAGCCGGT
GGACGAGATGGGGCCGGTCAACGCCAAGAAGCATTATCCGATTCACCGTCCGGCGCCCTCCTTTGAAGACCAGTCAACGC
GCCTCGAAATGTTCGAGACCGGCATCAAGGTCATCGATCTGATCGAGCCTTACTTGCGCGGCGGCAAAATCGGTCTGTTC
GGCGGCGCGGGCGTCGGCAAGACCGTCATCATTCAGGAGCTGATCAACAACCTCGCCATGAAGCACGGCGGCGTCTCGGT
GTTCGCCGGCGTGGGCGAGCGCACCAGGGAAGGCAACGATCTCTGGCTGGAATTCCAGGAATCGGGCGTTATCGACCCGC
ACGATTACACCAAATCCAAGTGCGCCCTGATCTACGGGCAGATGACCGAGCCGCCCGGAGCGCGTCTGCGCGTCGGCCTC
ACCGGGTTGACGGTCGCCGAGTACTTCCGCGATGAAGAACACCAGGACGTACTGCTCTTCATCGACAATATTTTCCGCTT
CACGCAGGCCGGTTCGGAAGTCTCCGCGCTGCTCGGACGTATGCCCAGCGCGGTCGGGTACCAGCCCAACCTGGCTACCG
AGATGGGCGAATTGCAGGAGCGCATCACCTCCACCAAGAACGGTTCCATCACCTCCGTGCAGGCCATCTACGTGCCGGCC
GACGACTACACCGACCCCGCTCCCGCAACGGCCTTCGCGCACCTGGACGCCACCACGAATCTCTCGCGCGACATCGCCGC
GCTGGGCATTTATCCGGCGGTCGATCCGCTGGCATCCACCTCGCGCATTCTGGATCCGCACATCGTCGGCGAAGATCACT
ATGCAACCGCGCAGATGGTGAAGGGAACACTGCAGCGCTACAAAGACCTGCAGGACATCATCGCCATTCTCGGTATCGAC
GAACTGTCGGACGAAGACAAACTAACTGTGGCCCGCGCGCGCAAGGTGCAGAAATTCCTTTCGCAGCCCTTCCACGTGGC
CGAGCAGTTCACCGGCTTCAAGGGCAAGTATGTGAAGCTGGCCGATAGCATCAAGGGTTTCCGCGAGATCGTGGAAGGCA
AGCACGATGGCGTCCCCGAACAGGCGTTCTACATGCAGGGGACCATCGAGGACGTGCTCGAAAAAGCGGAAGCCATGAAG
AAGGCGTAG

Upstream 100 bases:

>100_bases
GACAAGCTGACTTTGTACATGAACCGTGTACGCCAGGCCAGCATCACCAAGGAAATTATCGAGGTGGTGAGCGGCGCGGC
GGCGGCGGAGTAAGGAAATT

Downstream 100 bases:

>100_bases
CGCAATGCCCGACACTCTCGAACTCGAAGTCGCAACTCCCGAGCGCGAGCTGGTGCGCGAGCAGGTCACCGAAGTGCAGG
TGCCCGCGGCCCAGGGATAT

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MVTTNVVTGKVVVVSGPAVDCEFPEGQIPPVHTAIRIISEGFDIPTPIDIICEVQQHIGEGRVRTIALQPTEGLVRGMQA
ISLGHPVEVPVGPETLGRVLNVIGEPVDEMGPVNAKKHYPIHRPAPSFEDQSTRLEMFETGIKVIDLIEPYLRGGKIGLF
GGAGVGKTVIIQELINNLAMKHGGVSVFAGVGERTREGNDLWLEFQESGVIDPHDYTKSKCALIYGQMTEPPGARLRVGL
TGLTVAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMGELQERITSTKNGSITSVQAIYVPA
DDYTDPAPATAFAHLDATTNLSRDIAALGIYPAVDPLASTSRILDPHIVGEDHYATAQMVKGTLQRYKDLQDIIAILGID
ELSDEDKLTVARARKVQKFLSQPFHVAEQFTGFKGKYVKLADSIKGFREIVEGKHDGVPEQAFYMQGTIEDVLEKAEAMK
KA

Sequences:

>Translated_482_residues
MVTTNVVTGKVVVVSGPAVDCEFPEGQIPPVHTAIRIISEGFDIPTPIDIICEVQQHIGEGRVRTIALQPTEGLVRGMQA
ISLGHPVEVPVGPETLGRVLNVIGEPVDEMGPVNAKKHYPIHRPAPSFEDQSTRLEMFETGIKVIDLIEPYLRGGKIGLF
GGAGVGKTVIIQELINNLAMKHGGVSVFAGVGERTREGNDLWLEFQESGVIDPHDYTKSKCALIYGQMTEPPGARLRVGL
TGLTVAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMGELQERITSTKNGSITSVQAIYVPA
DDYTDPAPATAFAHLDATTNLSRDIAALGIYPAVDPLASTSRILDPHIVGEDHYATAQMVKGTLQRYKDLQDIIAILGID
ELSDEDKLTVARARKVQKFLSQPFHVAEQFTGFKGKYVKLADSIKGFREIVEGKHDGVPEQAFYMQGTIEDVLEKAEAMK
KA
>Mature_482_residues
MVTTNVVTGKVVVVSGPAVDCEFPEGQIPPVHTAIRIISEGFDIPTPIDIICEVQQHIGEGRVRTIALQPTEGLVRGMQA
ISLGHPVEVPVGPETLGRVLNVIGEPVDEMGPVNAKKHYPIHRPAPSFEDQSTRLEMFETGIKVIDLIEPYLRGGKIGLF
GGAGVGKTVIIQELINNLAMKHGGVSVFAGVGERTREGNDLWLEFQESGVIDPHDYTKSKCALIYGQMTEPPGARLRVGL
TGLTVAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMGELQERITSTKNGSITSVQAIYVPA
DDYTDPAPATAFAHLDATTNLSRDIAALGIYPAVDPLASTSRILDPHIVGEDHYATAQMVKGTLQRYKDLQDIIAILGID
ELSDEDKLTVARARKVQKFLSQPFHVAEQFTGFKGKYVKLADSIKGFREIVEGKHDGVPEQAFYMQGTIEDVLEKAEAMK
KA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=474, Percent_Identity=67.0886075949367, Blast_Score=634, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=300, Percent_Identity=29, Blast_Score=109, Evalue=6e-24,
Organism=Homo sapiens, GI19913428, Length=363, Percent_Identity=25.068870523416, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI19913426, Length=366, Percent_Identity=26.2295081967213, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI50345984, Length=291, Percent_Identity=25.4295532646048, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI4757810, Length=291, Percent_Identity=25.4295532646048, Blast_Score=83, Evalue=6e-16,
Organism=Escherichia coli, GI1790170, Length=474, Percent_Identity=63.2911392405063, Blast_Score=597, Evalue=1e-172,
Organism=Escherichia coli, GI1788251, Length=320, Percent_Identity=30.625, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1790172, Length=391, Percent_Identity=23.7851662404092, Blast_Score=96, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI25144756, Length=474, Percent_Identity=65.4008438818565, Blast_Score=620, Evalue=1e-178,
Organism=Caenorhabditis elegans, GI17565854, Length=351, Percent_Identity=28.2051282051282, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=362, Percent_Identity=25.6906077348066, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17570191, Length=360, Percent_Identity=25.2777777777778, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=291, Percent_Identity=25.085910652921, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71988063, Length=291, Percent_Identity=25.085910652921, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71988074, Length=273, Percent_Identity=23.4432234432234, Blast_Score=68, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322581, Length=468, Percent_Identity=66.4529914529915, Blast_Score=627, Evalue=1e-180,
Organism=Saccharomyces cerevisiae, GI6319603, Length=357, Percent_Identity=25.7703081232493, Blast_Score=106, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6319370, Length=364, Percent_Identity=25.2747252747253, Blast_Score=87, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=25.5905511811024, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24638766, Length=474, Percent_Identity=66.6666666666667, Blast_Score=625, Evalue=1e-179,
Organism=Drosophila melanogaster, GI28574560, Length=468, Percent_Identity=62.1794871794872, Blast_Score=568, Evalue=1e-162,
Organism=Drosophila melanogaster, GI20129479, Length=319, Percent_Identity=28.8401253918495, Blast_Score=116, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=28.7037037037037, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583988, Length=351, Percent_Identity=26.4957264957265, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583986, Length=351, Percent_Identity=26.4957264957265, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24583984, Length=351, Percent_Identity=26.4957264957265, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI281361666, Length=358, Percent_Identity=26.2569832402235, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24646341, Length=358, Percent_Identity=26.2569832402235, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI17136796, Length=358, Percent_Identity=26.2569832402235, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24638768, Length=98, Percent_Identity=45.9183673469388, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24658560, Length=291, Percent_Identity=24.0549828178694, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): ATPB_SOLUE (Q02BU1)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_821760.1
- ProteinModelPortal:   Q02BU1
- SMR:   Q02BU1
- STRING:   Q02BU1
- GeneID:   4431468
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_0465
- NMPDR:   fig|234267.9.peg.438
- eggNOG:   COG0055
- HOGENOM:   HBG565875
- OMA:   IGQEHYD
- PhylomeDB:   Q02BU1
- ProtClustDB:   PRK09280
- HAMAP:   MF_01347
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100
- PANTHER:   PTHR15184:SF8
- SMART:   SM00382
- TIGRFAMs:   TIGR01039

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N; SSF47917 ATPase_a/b_C; SSF50615 ATPase_a/b_N

EC number: =3.6.3.14

Molecular weight: Translated: 52509; Mature: 52509

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTTNVVTGKVVVVSGPAVDCEFPEGQIPPVHTAIRIISEGFDIPTPIDIICEVQQHIGE
CCCCEEEECEEEEEECCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
GRVRTIALQPTEGLVRGMQAISLGHPVEVPVGPETLGRVLNVIGEPVDEMGPVNAKKHYP
CCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCC
IHRPAPSFEDQSTRLEMFETGIKVIDLIEPYLRGGKIGLFGGAGVGKTVIIQELINNLAM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
KHGGVSVFAGVGERTREGNDLWLEFQESGVIDPHDYTKSKCALIYGQMTEPPGARLRVGL
HCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEE
TGLTVAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMGELQE
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCHHHHHHHHHH
RITSTKNGSITSVQAIYVPADDYTDPAPATAFAHLDATTNLSRDIAALGIYPAVDPLAST
HHHCCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCHHHH
SRILDPHIVGEDHYATAQMVKGTLQRYKDLQDIIAILGIDELSDEDKLTVARARKVQKFL
HHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHH
SQPFHVAEQFTGFKGKYVKLADSIKGFREIVEGKHDGVPEQAFYMQGTIEDVLEKAEAMK
CCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHEECCCHHHHHHHHHHHH
KA
CC
>Mature Secondary Structure
MVTTNVVTGKVVVVSGPAVDCEFPEGQIPPVHTAIRIISEGFDIPTPIDIICEVQQHIGE
CCCCEEEECEEEEEECCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
GRVRTIALQPTEGLVRGMQAISLGHPVEVPVGPETLGRVLNVIGEPVDEMGPVNAKKHYP
CCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCC
IHRPAPSFEDQSTRLEMFETGIKVIDLIEPYLRGGKIGLFGGAGVGKTVIIQELINNLAM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
KHGGVSVFAGVGERTREGNDLWLEFQESGVIDPHDYTKSKCALIYGQMTEPPGARLRVGL
HCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEE
TGLTVAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPNLATEMGELQE
CHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCCCCCHHHHHHHHHH
RITSTKNGSITSVQAIYVPADDYTDPAPATAFAHLDATTNLSRDIAALGIYPAVDPLAST
HHHCCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCHHHH
SRILDPHIVGEDHYATAQMVKGTLQRYKDLQDIIAILGIDELSDEDKLTVARARKVQKFL
HHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHH
SQPFHVAEQFTGFKGKYVKLADSIKGFREIVEGKHDGVPEQAFYMQGTIEDVLEKAEAMK
CCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHEECCCHHHHHHHHHHHH
KA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA