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The map label for this gene is xerD

Identifier: 116517040

GI number: 116517040

Start: 1669776

End: 1670516

Strand: Reverse

Name: xerD

Synonym: SPD_1657

Alternate gene names: NA

Gene position: 1670516-1669776 (Counterclockwise)

Preceding gene: 116515694

Following gene: 116516005

Centisome position: 81.64

GC content: 42.65

Gene sequence:

>741_bases
ATGCCAATGAGAGACAGGATTTCAGCCTTTTTAGAGGAAAAGCAGGGCTTGTCTGTCAATTCCAAGCAGTCCTATAAGTA
TGATTTGGAGCAATTTTTAGACATGGTAGGTGAGCGGATTTCTGAGACCAGTCTCAAGATTTACCAAGCCCAGCTAGCCA
ATCTAAAAATCAGCGCCCAGAAGCGAAAGATTTCGGCCTGTAACCAATTTCTATACTTTCTCTATCAAAAAGGAGAGGTG
GACAGCTTTTACCGCTTGGAATTAGCTAAACAAGCTGAAAAGAAGACGGAAAAGCCAGAGATTCTATACCTAGACTCTTT
TTGGCAGGAAAGCGACCATCCAGAGGGCCGCTTGCTAGCGCTCTTAATCCTAGAAATGGGGCTCTTGCCCAGTGAGATTT
TAGCCATCAAGGTTGCGGACATCAATCTGGATTTTCAGGTGCTGCGAATCAGCAAGGCTTCCCAACAGAGGATTGTCACC
ATTCCCACGGCCTTGCTTTCAGAATTGGAACCCTTGATGGGGCAGACCTATCTTTTTGAAAGAGGAGAGAAACCCTATTC
TCGTCAGTGGGCCTTTCGTCAGTTAGAATCTTTTGTCAAGGAGAAAGGTTTTCCATCCTTATCAGCTCAAGTCTTACGTG
AACAGTTTATTCTAAGACAAATAGAAAACAAGGTCGATTTGTACGAAATTGCAAAAAAATTAGGATTAAAAACAGTCCTG
ACCTTAGAAAAATATAGATAA

Upstream 100 bases:

>100_bases
TGGATGCAGAGGGTATTTTCCAAGGGATTATTACGCGCAAGTCCATCCTCAAGGCCGTTAATGCCCTCTTGCATGACTTT
AGTAAGGAATATGAGATTCG

Downstream 100 bases:

>100_bases
TGGATATTAAATTAAAAGATTTTGAAGGACCCCTGGACTTGCTCTTGCATCTGGTTTCTAAGTACCAGATGGATATCTAC
GATGTGCCCATTACGGAAGT

Product: site-specific tyrosine recombinase XerD-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MPMRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQKRKISACNQFLYFLYQKGEV
DSFYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLALLILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVT
IPTALLSELEPLMGQTYLFERGEKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVL
TLEKYR

Sequences:

>Translated_246_residues
MPMRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQKRKISACNQFLYFLYQKGEV
DSFYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLALLILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVT
IPTALLSELEPLMGQTYLFERGEKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVL
TLEKYR
>Mature_245_residues
PMRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQKRKISACNQFLYFLYQKGEVD
SFYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLALLILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVTI
PTALLSELEPLMGQTYLFERGEKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVLT
LEKYR

Specific function: Putative tyrosine recombinase. Not involved in the cutting and rejoining of the recombining DNA molecules on dif(SL) site [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD-like subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR020876 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 28702; Mature: 28571

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQ
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHH
KRKISACNQFLYFLYQKGEVDSFYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECHHCCCCCCCHHHHH
LLILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVTIPTALLSELEPLMGQTYLFE
HHHHHHCCCCCHHHEEEEEECCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCHHHHH
RGEKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVL
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHH
TLEKYR
HHHCCC
>Mature Secondary Structure 
PMRDRISAFLEEKQGLSVNSKQSYKYDLEQFLDMVGERISETSLKIYQAQLANLKISAQ
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHH
KRKISACNQFLYFLYQKGEVDSFYRLELAKQAEKKTEKPEILYLDSFWQESDHPEGRLLA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECHHCCCCCCCHHHHH
LLILEMGLLPSEILAIKVADINLDFQVLRISKASQQRIVTIPTALLSELEPLMGQTYLFE
HHHHHHCCCCCHHHEEEEEECCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHCCHHHHH
RGEKPYSRQWAFRQLESFVKEKGFPSLSAQVLREQFILRQIENKVDLYEIAKKLGLKTVL
CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHH
TLEKYR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA