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The map label for this gene is scpA [H]

Identifier: 116516005

GI number: 116516005

Start: 1669048

End: 1669776

Strand: Reverse

Name: scpA [H]

Synonym: SPD_1656

Alternate gene names: 116516005

Gene position: 1669776-1669048 (Counterclockwise)

Preceding gene: 116517040

Following gene: 116516630

Centisome position: 81.61

GC content: 45.4

Gene sequence:

>729_bases
ATGGATATTAAATTAAAAGATTTTGAAGGACCCCTGGACTTGCTCTTGCATCTGGTTTCTAAGTACCAGATGGATATCTA
CGATGTGCCCATTACGGAAGTCATCGAACAGTATCTAGCCTATGTTTCAACCCTGCAGGCCATGCGTCTGGAAGTGACGG
GTGAGTACATGGTCATGGCTAGTCAGCTCATGCTGATTAAGAGTCGTAAACTCCTTCCGAAGGTAGCAGAAGTGACAGAC
TTGGGGGATGACCTGGAGCAGGACCTCCTCTCTCAAATCGAAGAATATCGCAAGTTCAAGCTCTTGGGTGAGCACTTGGA
AGCCAAGCACCAAGAACGGGCCCAGTATTATTCCAAAGCGCCGACAGAGTTGATTTACGAAGATGCGGAGCTTGTGCATG
ACAAGACGACCATTGACCTCTTTTTGGCTTTTTCAAATATCCTAGCCAAGAAAAAAGAGGAGTTTGCACAAAATCACACG
ACGATCTTGCGGGATGAGTATAAGATTGAGGACATGATGATTATTGTGAAAGAATCCTTGATTGGACGAGATCAATTGCG
CTTGCAGGATTTGTTCAAGGAAGCCCAGAATGTCCAAGAGGTCATCACCCTCTTTTTGGCAACCCTAGAGTTAATCAAAA
CCCAGGAGCTGATCCTCGTGCAAGAGGAGAGTTTCGGAGATATCTATCTCATGGAAAAGAAGGAAGAAAGTCAAGTGCCT
CAAAGCTAG

Upstream 100 bases:

>100_bases
AACAGTTTATTCTAAGACAAATAGAAAACAAGGTCGATTTGTACGAAATTGCAAAAAAATTAGGATTAAAAACAGTCCTG
ACCTTAGAAAAATATAGATA

Downstream 100 bases:

>100_bases
ACTTGATAGAGAGGAAAGATGAGTACTTTAGCAAAAATAGAAGCGCTCTTGTTTGTAGCGGGTGAAGATGGGATTCGGGT
CCGCCAGTTAGCTGAACTCC

Product: segregation and condensation protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MDIKLKDFEGPLDLLLHLVSKYQMDIYDVPITEVIEQYLAYVSTLQAMRLEVTGEYMVMASQLMLIKSRKLLPKVAEVTD
LGDDLEQDLLSQIEEYRKFKLLGEHLEAKHQERAQYYSKAPTELIYEDAELVHDKTTIDLFLAFSNILAKKKEEFAQNHT
TILRDEYKIEDMMIIVKESLIGRDQLRLQDLFKEAQNVQEVITLFLATLELIKTQELILVQEESFGDIYLMEKKEESQVP
QS

Sequences:

>Translated_242_residues
MDIKLKDFEGPLDLLLHLVSKYQMDIYDVPITEVIEQYLAYVSTLQAMRLEVTGEYMVMASQLMLIKSRKLLPKVAEVTD
LGDDLEQDLLSQIEEYRKFKLLGEHLEAKHQERAQYYSKAPTELIYEDAELVHDKTTIDLFLAFSNILAKKKEEFAQNHT
TILRDEYKIEDMMIIVKESLIGRDQLRLQDLFKEAQNVQEVITLFLATLELIKTQELILVQEESFGDIYLMEKKEESQVP
QS
>Mature_242_residues
MDIKLKDFEGPLDLLLHLVSKYQMDIYDVPITEVIEQYLAYVSTLQAMRLEVTGEYMVMASQLMLIKSRKLLPKVAEVTD
LGDDLEQDLLSQIEEYRKFKLLGEHLEAKHQERAQYYSKAPTELIYEDAELVHDKTTIDLFLAFSNILAKKKEEFAQNHT
TILRDEYKIEDMMIIVKESLIGRDQLRLQDLFKEAQNVQEVITLFLATLELIKTQELILVQEESFGDIYLMEKKEESQVP
QS

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpB that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1354

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003768 [H]

Pfam domain/function: PF02616 ScpA_ScpB [H]

EC number: NA

Molecular weight: Translated: 28270; Mature: 28270

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKLKDFEGPLDLLLHLVSKYQMDIYDVPITEVIEQYLAYVSTLQAMRLEVTGEYMVMA
CCCCCCCCCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SQLMLIKSRKLLPKVAEVTDLGDDLEQDLLSQIEEYRKFKLLGEHLEAKHQERAQYYSKA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTELIYEDAELVHDKTTIDLFLAFSNILAKKKEEFAQNHTTILRDEYKIEDMMIIVKESL
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
IGRDQLRLQDLFKEAQNVQEVITLFLATLELIKTQELILVQEESFGDIYLMEKKEESQVP
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCHHCCCC
QS
CC
>Mature Secondary Structure
MDIKLKDFEGPLDLLLHLVSKYQMDIYDVPITEVIEQYLAYVSTLQAMRLEVTGEYMVMA
CCCCCCCCCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SQLMLIKSRKLLPKVAEVTDLGDDLEQDLLSQIEEYRKFKLLGEHLEAKHQERAQYYSKA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTELIYEDAELVHDKTTIDLFLAFSNILAKKKEEFAQNHTTILRDEYKIEDMMIIVKESL
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
IGRDQLRLQDLFKEAQNVQEVITLFLATLELIKTQELILVQEESFGDIYLMEKKEESQVP
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCHHCCCC
QS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11763967 [H]