Click here to switch to the map view.

The map label for this gene is ybjI [H]

Identifier: 116516975

GI number: 116516975

Start: 1133875

End: 1134669

Strand: Reverse

Name: ybjI [H]

Synonym: SPD_1103

Alternate gene names: 116516975

Gene position: 1134669-1133875 (Counterclockwise)

Preceding gene: 116515906

Following gene: 116515438

Centisome position: 55.45

GC content: 39.87

Gene sequence:

>795_bases
ATGACAATTAAACTAGTAGCAACGGATATGGACGGAACCTTCCTAGATGGGAATGGACGCTTTGATATGGATCGTCTCAA
GTCTCTCTTGGCTTCCTACAAGGAAAAAGGGATTTACTTTGCGGTGGCTTCGGGTCGGGGATTTCTGTCTCTGGAAAAAT
TATTTGCTGATGTTCGTGATGACATTATTTTCATCGCGGAAAATGGCAGTTTGGTAGAGTATCAAGGTCAGGACTTGTAT
GAAGCGACTATGTCTCGTGACTTTTATCTGGCAACTTTTGAAAAGCTGAAAACGTCACCTTATGTAGATATCAATAAACT
GCTCTTGACGGGTAAGAAGGGTTCATATGTTCTAGATACGGTTGATGAGACCTATTTGAAAGTGAGTCAGCATTATAATG
AAAATATCCAAAAAGTAGCGAGTTTGGAAGATATCACAGATGACATTTTCAAATTTACAACCAACTTCACAGAAGAAACG
CTAGAAGCTGGTGAAGCTTGGGTTAATGAACATGTCCCTGGTGTTAAGGCCATGACAACTGGCTTTGAATCTATTGATAT
TGTTCTGGACTATGTCGATAAGGGTGTAGCTATTGTTGAATTAGCTAAAAAACTTGGTATCACAATGGATCAGGTCATGG
CTTTTGGAGACAATCTTAATGACTTACATATGATGCAGGTTGTGGGACATCCTGTAGCTCCTGAAAATGCACGACCTGAA
ATTTTAGAATTAGCAAAGACTGTGATTGGTCACCATAAGGAACGGTCGGTTATAGCTTATATGGAGGGCTTATAA

Upstream 100 bases:

>100_bases
CCATGGCAGCGGCTGATTCCATCTATGGAGTGACCATGCAAGAATCGGGTGTTTCAAAGATTGTTTCAGTTAAGTTAAAA
GATTTAGAAAGTATTGAAGG

Downstream 100 bases:

>100_bases
TGGCAGATATAAAATTGATTGCATTGGACTTGGACGGGACCTTGCTGACTACTGATAAAAGGCTGACGGATCGTACCAAG
GAAACCTTGAAAGCTGCGCG

Product: Cof family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTIKLVATDMDGTFLDGNGRFDMDRLKSLLASYKEKGIYFAVASGRGFLSLEKLFADVRDDIIFIAENGSLVEYQGQDLY
EATMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDTVDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEET
LEAGEAWVNEHVPGVKAMTTGFESIDIVLDYVDKGVAIVELAKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPE
ILELAKTVIGHHKERSVIAYMEGL

Sequences:

>Translated_264_residues
MTIKLVATDMDGTFLDGNGRFDMDRLKSLLASYKEKGIYFAVASGRGFLSLEKLFADVRDDIIFIAENGSLVEYQGQDLY
EATMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDTVDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEET
LEAGEAWVNEHVPGVKAMTTGFESIDIVLDYVDKGVAIVELAKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPE
ILELAKTVIGHHKERSVIAYMEGL
>Mature_263_residues
TIKLVATDMDGTFLDGNGRFDMDRLKSLLASYKEKGIYFAVASGRGFLSLEKLFADVRDDIIFIAENGSLVEYQGQDLYE
ATMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDTVDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEETL
EAGEAWVNEHVPGVKAMTTGFESIDIVLDYVDKGVAIVELAKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPEI
LELAKTVIGHHKERSVIAYMEGL

Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates FMN and beta-glucose 1-phosphate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI87081790, Length=259, Percent_Identity=31.6602316602317, Blast_Score=140, Evalue=6e-35,
Organism=Escherichia coli, GI1787043, Length=248, Percent_Identity=28.6290322580645, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 29561; Mature: 29430

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKLVATDMDGTFLDGNGRFDMDRLKSLLASYKEKGIYFAVASGRGFLSLEKLFADVRD
CEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCC
DIIFIAENGSLVEYQGQDLYEATMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDT
CEEEEECCCCEEEECCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHEEEECCCCCEEEEC
VDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEETLEAGEAWVNEHVPGVKAMTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHC
GFESIDIVLDYVDKGVAIVELAKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPE
CCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHH
ILELAKTVIGHHKERSVIAYMEGL
HHHHHHHHHCCCCCCCEEEEECCC
>Mature Secondary Structure 
TIKLVATDMDGTFLDGNGRFDMDRLKSLLASYKEKGIYFAVASGRGFLSLEKLFADVRD
EEEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCC
DIIFIAENGSLVEYQGQDLYEATMSRDFYLATFEKLKTSPYVDINKLLLTGKKGSYVLDT
CEEEEECCCCEEEECCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHEEEECCCCCEEEEC
VDETYLKVSQHYNENIQKVASLEDITDDIFKFTTNFTEETLEAGEAWVNEHVPGVKAMTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHC
GFESIDIVLDYVDKGVAIVELAKKLGITMDQVMAFGDNLNDLHMMQVVGHPVAPENARPE
CCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHH
ILELAKTVIGHHKERSVIAYMEGL
HHHHHHHHHCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 10493123 [H]