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The map label for this gene is secY [H]

Identifier: 116516915

GI number: 116516915

Start: 205609

End: 206919

Strand: Direct

Name: secY [H]

Synonym: SPD_0213

Alternate gene names: 116516915

Gene position: 205609-206919 (Clockwise)

Preceding gene: 116515385

Following gene: 116515877

Centisome position: 10.05

GC content: 38.9

Gene sequence:

>1311_bases
ATGTTTTTTAAATTATTAAGAGAAGCTCTTAAAGTCAAGCAGGTTCGATCAAAAATTTTATTTACAATTTTTATCGTTTT
GGTCTTTCGTATCGGAACTAGCATTACAGTTCCTGGTGTGAATGCCAATAGCTTGAATGCTTTAAGTGGATTATCCTTCT
TAAACATGTTGAGCTTGGTGTCGGGGAATGCCCTAAAAAACTTTTCGATTTTTGCCCTAGGAGTTAGTCCCTATATCACC
GCTTCTATTGTTGTCCAACTCTTGCAAATGGATATTTTACCCAAGTTTGTAGAGTGGGGTAAACAAGGGGAAGTAGGTCG
AAGAAAATTGAATCAAGCTACTCGTTATATTGCTCTAGTTCTCGCTTTTGTGCAATCTATCGGGATTACAGCTGGTTTTA
ATACCTTGGCTGGAGCTCAATTGATTAAAACTGCTTTAACTCCACAAGTTTTTCTGACGATTGGTATCATCTTAACAGCT
GGTAGTATGATTGTCACTTGGTTGGGTGAGCAAATTACAGATAAGGGATACGGAAACGGTGTTTCCATGATTATCTTTGC
CGGGATTGTTTCCTCAATTCCAGAGATGATTCAGGGCATCTATGTGGACTACTTTGTGAACGTCCCAAGTAGCCGTATCA
CTTCATCTATCATTTTCGTAATCATTTTGATTATTACTGTATTGTTGATTATTTACTTTACAACTTATGTTCAACAAGCA
GAATACAAAATTCCAATCCAATATACTAAGGTTGCACAAGGTGCTCCATCTAGCTCTTACCTTCCGTTAAAGGTAAATCC
TGCTGGAGTTATCCCTGTTATCTTTGCCAGTTCGATTACTGCAGCGCCTGCGGCTATTCTTCAGTTTTTGAGTGCCACAG
GTCATGATTGGGCTTGGGTAAGGGTAGCACAAGAGATGTTGGCAACTACTTCTCCAACTGGTATTGCCATGTATGCTTTG
TTGATTATTCTCTTTACATTCTTCTATACGTTTGTACAGATTAATCCTGAAAAAGCAGCAGAGAGCCTACAAAAGAGTGG
TGCCTATATCCATGGAGTTCGTCCTGGTAAAGGTACAGAAGAATATATGTCTAAACTTCTTCGTCGTCTTGCAACTGTTG
GTTCCCTCTTCCTTGGTGTGATTTCCATTTTACCGATTGCAGCTAAAGATGTATTTGGTCTTTCTGATGTTGTTGCCTTT
GGTGGAACAAGTCTCTTGATCATTATCTCTACAGGTATCGAAGGAATCAAGCAATTGGAAGGTTACCTATTGAAACGTAA
GTATGTTGGTTTCATGGACAGAACAGAATAA

Upstream 100 bases:

>100_bases
TAAGAAATTGACTGTGAAAGCAGCTAAATTCTCTAAATCAGCTGAAGAAGCTATCACTGCTAAAGGTGGTTCAGTAGAAG
TCATCTAAGAGAGGTGACCT

Downstream 100 bases:

>100_bases
AAGTATTTACTGAATCAGTAAATACTGAGGGAGTGGAGGTTTAAACTCTGACATTTGTAAGAGTTGGATCTCCCCTCTTC
TATTTTGTTTTTAAATCGGG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MFFKLLREALKVKQVRSKILFTIFIVLVFRIGTSITVPGVNANSLNALSGLSFLNMLSLVSGNALKNFSIFALGVSPYIT
ASIVVQLLQMDILPKFVEWGKQGEVGRRKLNQATRYIALVLAFVQSIGITAGFNTLAGAQLIKTALTPQVFLTIGIILTA
GSMIVTWLGEQITDKGYGNGVSMIIFAGIVSSIPEMIQGIYVDYFVNVPSSRITSSIIFVIILIITVLLIIYFTTYVQQA
EYKIPIQYTKVAQGAPSSSYLPLKVNPAGVIPVIFASSITAAPAAILQFLSATGHDWAWVRVAQEMLATTSPTGIAMYAL
LIILFTFFYTFVQINPEKAAESLQKSGAYIHGVRPGKGTEEYMSKLLRRLATVGSLFLGVISILPIAAKDVFGLSDVVAF
GGTSLLIIISTGIEGIKQLEGYLLKRKYVGFMDRTE

Sequences:

>Translated_436_residues
MFFKLLREALKVKQVRSKILFTIFIVLVFRIGTSITVPGVNANSLNALSGLSFLNMLSLVSGNALKNFSIFALGVSPYIT
ASIVVQLLQMDILPKFVEWGKQGEVGRRKLNQATRYIALVLAFVQSIGITAGFNTLAGAQLIKTALTPQVFLTIGIILTA
GSMIVTWLGEQITDKGYGNGVSMIIFAGIVSSIPEMIQGIYVDYFVNVPSSRITSSIIFVIILIITVLLIIYFTTYVQQA
EYKIPIQYTKVAQGAPSSSYLPLKVNPAGVIPVIFASSITAAPAAILQFLSATGHDWAWVRVAQEMLATTSPTGIAMYAL
LIILFTFFYTFVQINPEKAAESLQKSGAYIHGVRPGKGTEEYMSKLLRRLATVGSLFLGVISILPIAAKDVFGLSDVVAF
GGTSLLIIISTGIEGIKQLEGYLLKRKYVGFMDRTE
>Mature_436_residues
MFFKLLREALKVKQVRSKILFTIFIVLVFRIGTSITVPGVNANSLNALSGLSFLNMLSLVSGNALKNFSIFALGVSPYIT
ASIVVQLLQMDILPKFVEWGKQGEVGRRKLNQATRYIALVLAFVQSIGITAGFNTLAGAQLIKTALTPQVFLTIGIILTA
GSMIVTWLGEQITDKGYGNGVSMIIFAGIVSSIPEMIQGIYVDYFVNVPSSRITSSIIFVIILIITVLLIIYFTTYVQQA
EYKIPIQYTKVAQGAPSSSYLPLKVNPAGVIPVIFASSITAAPAAILQFLSATGHDWAWVRVAQEMLATTSPTGIAMYAL
LIILFTFFYTFVQINPEKAAESLQKSGAYIHGVRPGKGTEEYMSKLLRRLATVGSLFLGVISILPIAAKDVFGLSDVVAF
GGTSLLIIISTGIEGIKQLEGYLLKRKYVGFMDRTE

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=423, Percent_Identity=38.2978723404255, Blast_Score=242, Evalue=3e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47354; Mature: 47354

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFKLLREALKVKQVRSKILFTIFIVLVFRIGTSITVPGVNANSLNALSGLSFLNMLSLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHH
SGNALKNFSIFALGVSPYITASIVVQLLQMDILPKFVEWGKQGEVGRRKLNQATRYIALV
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LAFVQSIGITAGFNTLAGAQLIKTALTPQVFLTIGIILTAGSMIVTWLGEQITDKGYGNG
HHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VSMIIFAGIVSSIPEMIQGIYVDYFVNVPSSRITSSIIFVIILIITVLLIIYFTTYVQQA
HHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EYKIPIQYTKVAQGAPSSSYLPLKVNPAGVIPVIFASSITAAPAAILQFLSATGHDWAWV
CCCCCEEEHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RVAQEMLATTSPTGIAMYALLIILFTFFYTFVQINPEKAAESLQKSGAYIHGVRPGKGTE
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHCCCEEEECCCCCCHH
EYMSKLLRRLATVGSLFLGVISILPIAAKDVFGLSDVVAFGGTSLLIIISTGIEGIKQLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHH
GYLLKRKYVGFMDRTE
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFFKLLREALKVKQVRSKILFTIFIVLVFRIGTSITVPGVNANSLNALSGLSFLNMLSLV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHH
SGNALKNFSIFALGVSPYITASIVVQLLQMDILPKFVEWGKQGEVGRRKLNQATRYIALV
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LAFVQSIGITAGFNTLAGAQLIKTALTPQVFLTIGIILTAGSMIVTWLGEQITDKGYGNG
HHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VSMIIFAGIVSSIPEMIQGIYVDYFVNVPSSRITSSIIFVIILIITVLLIIYFTTYVQQA
HHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EYKIPIQYTKVAQGAPSSSYLPLKVNPAGVIPVIFASSITAAPAAILQFLSATGHDWAWV
CCCCCEEEHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RVAQEMLATTSPTGIAMYALLIILFTFFYTFVQINPEKAAESLQKSGAYIHGVRPGKGTE
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHCCCEEEECCCCCCHH
EYMSKLLRRLATVGSLFLGVISILPIAAKDVFGLSDVVAFGGTSLLIIISTGIEGIKQLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHH
GYLLKRKYVGFMDRTE
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]