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The map label for this gene is ydiC [H]

Identifier: 116516776

GI number: 116516776

Start: 137885

End: 138568

Strand: Direct

Name: ydiC [H]

Synonym: SPD_0134

Alternate gene names: 116516776

Gene position: 137885-138568 (Clockwise)

Preceding gene: 116515312

Following gene: 116516175

Centisome position: 6.74

GC content: 45.47

Gene sequence:

>684_bases
ATGAAAGTATTAGCTTTTGATACGTCCAGCAAGGCTCTTTCTCTCGCTATTTTAGAGGATAAGCAGGTTCTTGCCGAGAC
GACGATTAATATTAAGAAAAATCACAGTATTACCCTTATGCCTGCCATAGATTTTTTGATGGCAAGTTTGGATTGGACAC
CCAAGGACTTGGACCGAATCGTGGTAGCTGAAGGGCCGGGTAGCTATACAGGCTTGCGAATTGCGGTAGCAACTGCTAAG
ACCTTAGCTCACACCCTGAACATCGAGTTGGTTGGTATGTCGAGTCTCTTGGCTCTGGTGCCCTACCAACAAGAAGGTTT
GTTTATCCCCTTGATGGATGCGCGTCGCAATAATGTTTATGCAGGATTTTATGAAAATGCCAAACCTGTCATGGCAGAAG
CACATCTGCCTTTTGAGCGAGTCATTGAGCTAATCAAGGGCGCTAGTCAGGTAACCTTTGTCGGAGAAGTTGGCCCCTTT
GTTGAGCAGATTCAAAAACACTTGCCAAGGACTGATTACAAAGAAACATTGCCCAATGCAGCTAATCTAGCTCTTTTGGC
CTGGGACAAGGAAGCAGACTCCTTGCATGATTTTGTGCCAAATTACCTCAAACGTGTTGAGGCAGAGGAAAACTGGCTCA
AGAACCATACCGAGTCTGGTGAGTCCTACATTAAACGCCTATGA

Upstream 100 bases:

>100_bases
TTTAGTTAAGTGAGGGCACTCTTGTCTGGGGGCAAAGAAAATTCCCATGTGCCAGCTTTTGTAGTATAATAGTAAGCAGA
CAAAAAGATAGGAATGTGTT

Downstream 100 bases:

>100_bases
TAGAAATCAAACGAATCCAACAGCAACCTGACTTGGCTCAAGATATCTACGCTGTCATGGCAGCTGTTTACCCAGTCAGT
CCTTGGACACTAGAACAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRIVVAEGPGSYTGLRIAVATAK
TLAHTLNIELVGMSSLLALVPYQQEGLFIPLMDARRNNVYAGFYENAKPVMAEAHLPFERVIELIKGASQVTFVGEVGPF
VEQIQKHLPRTDYKETLPNAANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL

Sequences:

>Translated_227_residues
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRIVVAEGPGSYTGLRIAVATAK
TLAHTLNIELVGMSSLLALVPYQQEGLFIPLMDARRNNVYAGFYENAKPVMAEAHLPFERVIELIKGASQVTFVGEVGPF
VEQIQKHLPRTDYKETLPNAANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
>Mature_227_residues
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRIVVAEGPGSYTGLRIAVATAK
TLAHTLNIELVGMSSLLALVPYQQEGLFIPLMDARRNNVYAGFYENAKPVMAEAHLPFERVIELIKGASQVTFVGEVGPF
VEQIQKHLPRTDYKETLPNAANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL

Specific function: Unknown

COG id: COG1214

COG function: function code O; Inactive homolog of metal-dependent proteases, putative molecular chaperone

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M22 family [H]

Homologues:

Organism=Escherichia coli, GI1788109, Length=129, Percent_Identity=27.1317829457364, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022496
- InterPro:   IPR000905 [H]

Pfam domain/function: PF00814 Peptidase_M22 [H]

EC number: NA

Molecular weight: Translated: 25335; Mature: 25335

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRI
CEEEEEECCCCEEEEEEECCCHHHHHHEEEEECCCCEEEHHHHHHHHHHCCCCHHCCCEE
VVAEGPGSYTGLRIAVATAKTLAHTLNIELVGMSSLLALVPYQQEGLFIPLMDARRNNVY
EEECCCCCCCCEEEEEHHHHHHHHHHCEEEECHHHHHHHCCCCCCCEEEEEECCCCCCEE
AGFYENAKPVMAEAHLPFERVIELIKGASQVTFVGEVGPFVEQIQKHLPRTDYKETLPNA
EEECCCCCCEEEECCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHCCCC
ANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRI
CEEEEEECCCCEEEEEEECCCHHHHHHEEEEECCCCEEEHHHHHHHHHHCCCCHHCCCEE
VVAEGPGSYTGLRIAVATAKTLAHTLNIELVGMSSLLALVPYQQEGLFIPLMDARRNNVY
EEECCCCCCCCEEEEEHHHHHHHHHHCEEEECHHHHHHHCCCCCCCEEEEEECCCCCCEE
AGFYENAKPVMAEAHLPFERVIELIKGASQVTFVGEVGPFVEQIQKHLPRTDYKETLPNA
EEECCCCCCEEEECCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHCCCC
ANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]