Click here to switch to the map view.

The map label for this gene is arlR [H]

Identifier: 116516655

GI number: 116516655

Start: 348698

End: 349387

Strand: Direct

Name: arlR [H]

Synonym: SPD_0344

Alternate gene names: 116516655

Gene position: 348698-349387 (Clockwise)

Preceding gene: 116515453

Following gene: 116515498

Centisome position: 17.04

GC content: 42.17

Gene sequence:

>690_bases
ATGGGGAAACGGATTTTATTACTTGAGAAAGAACGAAATCTAGCTCATTTTTTAAGTTTGGAACTCCAGAAAGAGCAGTA
TCGGGTTGATCTGGTAGAGGAGGGGCAAAAAGCCCTCTCCATGGCTCTTCAGACAGACTATGATTTGATTTTATTGAACG
TTAATCTGGGAGATATGATGGCTCAGGATTTTGCAGAAAAATTGAGCCGAACTAAACCTGCCTCAGTCATCATGATTTTA
GATCATTGGGAAGACTTGCAAGAAGAGCTGGAAGTTGTTCAGCGTTTTGCAGTTTCATACATCTATAAGCCAGTCCTTAT
CGAAAATCTGGTAGCGCGTATTTCGGCGATCTTCCGAGGTCGGGACTTCATTGATCAACACTGCAGTCTGATGAAAGTTC
CAAGGACCTACCGCAATCTTAGGATAGATGTTGAACATCACACGGTTTATCGTGGTGAAGAGATGATTGCTCTGACACGC
CGTGAGTATGACCTTTTGGCGACACTTATGGGAAGCAAGAAAGTATTGACTCGTGAGCAATTGTTGGAAAGTGTTTGGAA
GTATGAAAGTGCGACCGAGACAAATATCGTAGATGTCTATATCCGCTATCTACGGAGCAAGCTTGATGTTAAAGGACAAA
AAAGCTACATTAAAACTGTGCGTGGTGTTGGATATACCATGCAAGAATAG

Upstream 100 bases:

>100_bases
AAGCACAACGTGACTACTTTGGTGCTCACACTTACCAACGTAAAGACAAAGAAGGAACCTTCCACTACTCTTGGTATGAC
GAAAAATAAGTAGGTCAGCC

Downstream 100 bases:

>100_bases
AAAAGCAGTTGCAGTTGTGTAACTGCTTTTTTGAGGAGTTTTTATATATTGACATGCAGTCGGGTCTTTGCTACAATCGT
TTTAGGAGGATATATAGATG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMIL
DHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE

Sequences:

>Translated_229_residues
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMIL
DHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE
>Mature_228_residues
GKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMILD
HWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTRR
EYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE

Specific function: Member of the two-component regulatory system ArlS/ArlR [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082012, Length=225, Percent_Identity=30.2222222222222, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=26.9911504424779, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786599, Length=231, Percent_Identity=31.1688311688312, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786911, Length=223, Percent_Identity=28.6995515695067, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=27.4336283185841, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=28.8888888888889, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1789402, Length=227, Percent_Identity=25.5506607929515, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=25.1121076233184, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=30, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26881; Mature: 26749

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMM
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
AQDFAEKLSRTKPASVIMILDHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRG
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTRREYDLLATLMGSKKVLTREQ
HHHHHHHHHHHHCCHHHHCEEEEEEHHEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
LLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMM
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
AQDFAEKLSRTKPASVIMILDHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRG
HHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTRREYDLLATLMGSKKVLTREQ
HHHHHHHHHHHHCCHHHHCEEEEEEHHEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
LLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA