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The map label for this gene is cbpC [H]

Identifier: 116515498

GI number: 116515498

Start: 349485

End: 350501

Strand: Direct

Name: cbpC [H]

Synonym: SPD_0345

Alternate gene names: 116515498

Gene position: 349485-350501 (Clockwise)

Preceding gene: 116516655

Following gene: 116516899

Centisome position: 17.08

GC content: 36.97

Gene sequence:

>1017_bases
ATGAAACTTTTGAAAAAAATGATGCAAGTTCTACTAGCAGTCTTTTTCTTTGGTTTGCTAGCTACAAATACGGTATTTGC
GAATACCACAGGTGGCCGATTTGTTGATAAGGATAATAGAAAATATTATGTAAAAGATGATCATAAAGCAATCTATTGGC
ATAAAATAGACGGTAAAACTTACTATTTTGGTGATATTGGAGAGATGGTTGTCGGTTGGCAATACTTAGAAATTCCTGGA
ACAGGTTATCGTGATAATTTATTCGATAACCAACCAGTTAATGAAATTGGCCTTCAGGAGAAGTGGTACTATTTTGGACA
AGATGGTGCTTTGCTAGAACAAACAGATAAACAAGTACTAGAGGCAAAAACGTCTGAAAATACAGGAAAAGTATACGGTG
AACAATATCCTCTATCTGCTGAAAAGAGAACTTATTATTTTGATAATAATTATGCTGTAAAGACAGGCTGGATTTATGAA
GACGGCAATTGGTATTATTTAAATAAGCTAGGAAATTTTGGCGATGATTCTTACAATCCACTACCAATTGGTGAAGTTGC
TAAGGGTTGGACTCAAGATTTTCATGTTACTATTGACATTGATAGAAGCAAACCTGCTCCATGGTACTACCTAGATGCTT
CAGGTAAGATGCTTACAGATTGGCAAAAAGTAAACGGAAAATGGTATTATTTTGGCTCCTCTGGTTCTATGGCAACAGGT
TGGAAATATGTACGAGGCAAATGGTATTACTTAGATAATAAAAATGGTGATATGAAAACAGGATGGCAATACCTTGGTAA
CAAGTGGTACTACCTCCGTTCATCAGGAGCTATGGTAACTGGCTGGTATCAAGATGGTTTAACTTGGTACTACCTAAATG
CAGGTAATGGAGACATGAAGACAGGTTGGTTCCAGGTCAATGGCAAATGGTACTATGCTTATAGCTCAGGTGCCTTGGCA
GTGAATACGACCGTAGATGGCTATTCTGTCAACTATAATGGCGAATGGGTTCAATAA

Upstream 100 bases:

>100_bases
TAGAAAAGCAGTTGCAGTTGTGTAACTGCTTTTTTGAGGAGTTTTTATATATTGACATGCAGTCGGGTCTTTGCTACAAT
CGTTTTAGGAGGATATATAG

Downstream 100 bases:

>100_bases
TGAAAGAAGCGATTGCGAATGGAAACAATCGCTTTTTTTGTGAAAATATAATAAAATAGATAGGAAAGAATTAATACTTG
TATGAAAAATAAGACGTTTT

Product: choline binding protein C

Products: NA

Alternate protein names: Cell wall hydrolase; Mucopeptide aminohydrolase; Murein hydrolase; N-acetylmuramoyl-L-alanine amidase [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPG
TGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYE
DGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATG
WKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALA
VNTTVDGYSVNYNGEWVQ

Sequences:

>Translated_338_residues
MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPG
TGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYE
DGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATG
WKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALA
VNTTVDGYSVNYNGEWVQ
>Mature_338_residues
MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPG
TGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYE
DGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATG
WKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALA
VNTTVDGYSVNYNGEWVQ

Specific function: Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation. Autolysin strictly depends on the presence of choline-containing

COG id: COG5263

COG function: function code R; FOG: Glucan-binding domain (YG repeat)

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 cell wall-binding repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR018337 [H]

Pfam domain/function: PF01510 Amidase_2; PF01473 CW_binding_1 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 39346; Mature: 39346

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
CHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCEEEEECCCEEEEEEEECCCE
YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
EEECCCCCCEECEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHH
EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNP
HHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEECCCEEEEECCCCCCCCCCCC
LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATG
CCHHHHHCCCCCEEEEEEEECCCCCCCEEEECCCCCEEECEEECCCEEEEEECCCCCCCC
WKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMK
EEEECEEEEEEECCCCCCCHHHHHHCCEEEEEECCCCEEEEEEECCEEEEEEECCCCCCE
TGWFQVNGKWYYAYSSGALAVNTTVDGYSVNYNGEWVQ
EEEEEECCEEEEEEECCCEEEEEEECCEEEECCCCCCC
>Mature Secondary Structure
MKLLKKMMQVLLAVFFFGLLATNTVFANTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKT
CHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCEEEEECCCEEEEEEEECCCE
YYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVL
EEECCCCCCEECEEEEEECCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHH
EAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNP
HHCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEECCCEEEEECCCCCCCCCCCC
LPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATG
CCHHHHHCCCCCEEEEEEEECCCCCCCEEEECCCCCEEECEEECCCEEEEEECCCCCCCC
WKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMK
EEEECEEEEEEECCCCCCCHHHHHHCCEEEEEECCCCEEEEEEECCEEEEEEECCCCCCE
TGWFQVNGKWYYAYSSGALAVNTTVDGYSVNYNGEWVQ
EEEEEECCEEEEEEECCCEEEEEEECCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2875013; 11463916 [H]