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The map label for this gene is ycjN [C]

Identifier: 116516571

GI number: 116516571

Start: 1519652

End: 1520989

Strand: Reverse

Name: ycjN [C]

Synonym: SPD_1502

Alternate gene names: 116516571

Gene position: 1520989-1519652 (Counterclockwise)

Preceding gene: 116515591

Following gene: 116515660

Centisome position: 74.34

GC content: 36.02

Gene sequence:

>1338_bases
ATGAAAAAAATGAGAAAGTTTTTATGTCTAGCTGGAATTGCGCTAGCGGCTGTTGCCTTGGTAGCTTGTTCAGGAAAAAA
AGAAGCTACAACTAGTACTGAACCACCAACAGAATTATCTGGTGAGATTACAATGTGGCACTCCTTTACTCAAGGACCCC
GTTTAGAAAGTATTCAAAAATCAGCAGATGCTTTCATGCAAAAGCATCCAAAAACGAAAATCAAGATTGAAACATTTTCT
TGGAATGACTTCTATACTAAATGGACTACAGGTTTAGCAAATGGAAATGTGCCAGATATCAGTACAGCTCTTCCTAACCA
AGTAATGGAAATGGTCAACTCAGATGCTTTGGTTCCGCTAAATGATTCTATCAAGCGTATTGGACAAGATAAATTTAACG
AAACTGCCTTAAATGAAGCAAAAATCGGAGATGATTACTACTCTGTTCCTCTTTATTCACATGCACAAGTCATGTGGGTT
AGAACAGATTTGTTAAAAGAACATAATATTGAGGTTCCTAAAACTTGGGATCAACTCTATGAAGCTTCTAAAAAATTGAA
AGAAGCTGGAGTTTATGGCTTGTCTGTTCCGTTTGGAACAAATGACTTAATGGCAACACGTTTCTTGAACTTCTACGTAC
GTAGTGGCGGAGGAAGCCTCTTAACAAAAGATCTTAAAGCAGACTTGACAAGCCAACTTGCTCAAGATGGTATTAAATAC
TGGGTTAAATTGTATAAAGAAATCTCACCTCAAGATTCTTTGAACTTTAATGTCCTTCAACAAGCTACCTTGTTCTATCA
AGGAAAAACAGCATTTGACTTTAACTCTGGCTTCCATATCGGAGGAATTAATGCCAACAGTCCTCAATTGATTGATTCGA
TTGATGCTTATCCTATTCCAAAAATCAAAGAGTCTGATAAAGACCAAGGAATTGAAACCTCAAACATTCCAATGGTTGTT
TGGAAAAATTCAAAACATCCAGAAGTTGCTAAAGCATTCTTAGAAGCACTTTATAATGAAGAAGACTACGTTAAATTCCT
TGATTCAACTCCAGTAGGTATGTTGCCAACTATTAAGGGGATTAGCGATTCTGCAGCCTATAAAGAAAATGAAACTCGTA
AGAAGTTTAAACATGCTGAAGAAGTAATTACTGAAGCTGTTAAAAAAGGTACTGCTATTGGTTATGAAAATGGACCAAGT
GTACAAGCTGGTATGTTGACTAACCAACACATTATTGAACAAATGTTCCAAGATATCATTACAAATGGAACAGATCCTAT
GAAAGCAGCAAAAGAAGCAGAAAAACAATTAAACGATTTATTTGAGGCTGTTCAGTAG

Upstream 100 bases:

>100_bases
TCCAGAAGATTTACATCAACCCAAGGTTCGTATAAATGATGAACCTGTGAAAAAAGTTGTCTTTAAAGTTGCGATTTCTT
AATGTAGAAAGAGAAGAACG

Downstream 100 bases:

>100_bases
ATGTAAAAGACTAGAAAATAGGTGGGCTAGTGAGCTGAAAAGCTCTAGCCCAATCTTGTAAAAGAAGGGAGAAGGAGAAT
GGTTAAAGAACGTAATTTAA

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MKKMRKFLCLAGIALAAVALVACSGKKEATTSTEPPTELSGEITMWHSFTQGPRLESIQKSADAFMQKHPKTKIKIETFS
WNDFYTKWTTGLANGNVPDISTALPNQVMEMVNSDALVPLNDSIKRIGQDKFNETALNEAKIGDDYYSVPLYSHAQVMWV
RTDLLKEHNIEVPKTWDQLYEASKKLKEAGVYGLSVPFGTNDLMATRFLNFYVRSGGGSLLTKDLKADLTSQLAQDGIKY
WVKLYKEISPQDSLNFNVLQQATLFYQGKTAFDFNSGFHIGGINANSPQLIDSIDAYPIPKIKESDKDQGIETSNIPMVV
WKNSKHPEVAKAFLEALYNEEDYVKFLDSTPVGMLPTIKGISDSAAYKENETRKKFKHAEEVITEAVKKGTAIGYENGPS
VQAGMLTNQHIIEQMFQDIITNGTDPMKAAKEAEKQLNDLFEAVQ

Sequences:

>Translated_445_residues
MKKMRKFLCLAGIALAAVALVACSGKKEATTSTEPPTELSGEITMWHSFTQGPRLESIQKSADAFMQKHPKTKIKIETFS
WNDFYTKWTTGLANGNVPDISTALPNQVMEMVNSDALVPLNDSIKRIGQDKFNETALNEAKIGDDYYSVPLYSHAQVMWV
RTDLLKEHNIEVPKTWDQLYEASKKLKEAGVYGLSVPFGTNDLMATRFLNFYVRSGGGSLLTKDLKADLTSQLAQDGIKY
WVKLYKEISPQDSLNFNVLQQATLFYQGKTAFDFNSGFHIGGINANSPQLIDSIDAYPIPKIKESDKDQGIETSNIPMVV
WKNSKHPEVAKAFLEALYNEEDYVKFLDSTPVGMLPTIKGISDSAAYKENETRKKFKHAEEVITEAVKKGTAIGYENGPS
VQAGMLTNQHIIEQMFQDIITNGTDPMKAAKEAEKQLNDLFEAVQ
>Mature_445_residues
MKKMRKFLCLAGIALAAVALVACSGKKEATTSTEPPTELSGEITMWHSFTQGPRLESIQKSADAFMQKHPKTKIKIETFS
WNDFYTKWTTGLANGNVPDISTALPNQVMEMVNSDALVPLNDSIKRIGQDKFNETALNEAKIGDDYYSVPLYSHAQVMWV
RTDLLKEHNIEVPKTWDQLYEASKKLKEAGVYGLSVPFGTNDLMATRFLNFYVRSGGGSLLTKDLKADLTSQLAQDGIKY
WVKLYKEISPQDSLNFNVLQQATLFYQGKTAFDFNSGFHIGGINANSPQLIDSIDAYPIPKIKESDKDQGIETSNIPMVV
WKNSKHPEVAKAFLEALYNEEDYVKFLDSTPVGMLPTIKGISDSAAYKENETRKKFKHAEEVITEAVKKGTAIGYENGPS
VQAGMLTNQHIIEQMFQDIITNGTDPMKAAKEAEKQLNDLFEAVQ

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787569, Length=441, Percent_Identity=20.4081632653061, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49639; Mature: 49639

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMRKFLCLAGIALAAVALVACSGKKEATTSTEPPTELSGEITMWHSFTQGPRLESIQK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
SADAFMQKHPKTKIKIETFSWNDFYTKWTTGLANGNVPDISTALPNQVMEMVNSDALVPL
HHHHHHHHCCCCEEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEECC
NDSIKRIGQDKFNETALNEAKIGDDYYSVPLYSHAQVMWVRTDLLKEHNIEVPKTWDQLY
CHHHHHHHHHHHHHHHCCHHHCCCCCEECCCCCCCEEEEHHHHHHHHCCCCCCHHHHHHH
EASKKLKEAGVYGLSVPFGTNDLMATRFLNFYVRSGGGSLLTKDLKADLTSQLAQDGIKY
HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
WVKLYKEISPQDSLNFNVLQQATLFYQGKTAFDFNSGFHIGGINANSPQLIDSIDAYPIP
HHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCCHHHHCCCCCCCC
KIKESDKDQGIETSNIPMVVWKNSKHPEVAKAFLEALYNEEDYVKFLDSTPVGMLPTIKG
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCC
ISDSAAYKENETRKKFKHAEEVITEAVKKGTAIGYENGPSVQAGMLTNQHIIEQMFQDII
CCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
TNGTDPMKAAKEAEKQLNDLFEAVQ
HCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKMRKFLCLAGIALAAVALVACSGKKEATTSTEPPTELSGEITMWHSFTQGPRLESIQK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
SADAFMQKHPKTKIKIETFSWNDFYTKWTTGLANGNVPDISTALPNQVMEMVNSDALVPL
HHHHHHHHCCCCEEEEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEECC
NDSIKRIGQDKFNETALNEAKIGDDYYSVPLYSHAQVMWVRTDLLKEHNIEVPKTWDQLY
CHHHHHHHHHHHHHHHCCHHHCCCCCEECCCCCCCEEEEHHHHHHHHCCCCCCHHHHHHH
EASKKLKEAGVYGLSVPFGTNDLMATRFLNFYVRSGGGSLLTKDLKADLTSQLAQDGIKY
HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
WVKLYKEISPQDSLNFNVLQQATLFYQGKTAFDFNSGFHIGGINANSPQLIDSIDAYPIP
HHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCCHHHHCCCCCCCC
KIKESDKDQGIETSNIPMVVWKNSKHPEVAKAFLEALYNEEDYVKFLDSTPVGMLPTIKG
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCC
ISDSAAYKENETRKKFKHAEEVITEAVKKGTAIGYENGPSVQAGMLTNQHIIEQMFQDII
CCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
TNGTDPMKAAKEAEKQLNDLFEAVQ
HCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA