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The map label for this gene is yurN [H]

Identifier: 116515660

GI number: 116515660

Start: 1518689

End: 1519573

Strand: Reverse

Name: yurN [H]

Synonym: SPD_1501

Alternate gene names: 116515660

Gene position: 1519573-1518689 (Counterclockwise)

Preceding gene: 116516571

Following gene: 116516337

Centisome position: 74.27

GC content: 37.06

Gene sequence:

>885_bases
ATGGTTAAAGAACGTAATTTAACTCGCTGGATATTTGTTTTGCCAGCTATGATTATCGTAGGATTACTCTTTGTTTATCC
GTTTTTCTCGAGTATTTTTTATAGCTTTACCAATAAGCATTTGATTATGCCTAATTATAAATTTGTTGGTTTGGCTAACT
ATAAAGCTGTGCTATCAGATCCCAACTTCTTTAATGCGTTCTTTAATTCAATTAAGTGGACCATTTTCTCATTAGTTGGT
CAAGTTTTAGTAGGGTTTGTATTGGCTTTAGCTCTTCACAGAGTACGCCACTTCAAGAAATTATATAGGACCTTATTGAT
TGTTCCTTGGGCATTTCCTACCATCGTTATTGCCTTCTCTTGGCAGTGGATTCTAAACGGGGTTTATGGCTACTTACCTA
ATCTAATCGTAAAATTAGGTTTAATGGAACATACACCTGCATTTTTGACAGATAGTACATGGGCATTCCTATGTTTGGTG
TTTATCAACATTTGGTTTGGAGCACCAATGATTATGGTTAATGTGCTTTCAGCTTTGCAAACAGTACCAGAAGAACAATT
TGAGGCTGCTAAGATAGATGGTGCTTCAAGTTGGCAGGTGTTCAAGTTTATCGTCTTTCCACATATTAAAGTGGTTGTAG
GACTTCTAGTTGTTTTGAGAACTGTATGGATCTTTAATAACTTTGACATTATCTACCTCATTACTGGTGGTGGACCAGCC
AATGCTACAACGACGCTTCCAATTTTTGCTTACAACCTGGGTTGGGGAACTAAATTGTTGGGTCGTGCTTCAGCAGTTAC
AGTATTGCTCTTTATCTTCTTGGTGGCGATTTGCTTTATCTACTTTGCTATCATCAGTAAGTGGGAAAAGGAGGGTAGAA
AATAA

Upstream 100 bases:

>100_bases
TTTATTTGAGGCTGTTCAGTAGATGTAAAAGACTAGAAAATAGGTGGGCTAGTGAGCTGAAAAGCTCTAGCCCAATCTTG
TAAAAGAAGGGAGAAGGAGA

Downstream 100 bases:

>100_bases
TGAAGAAGAAATCCGGTATTTATTTAGATATTCTCTCACATGTACTTTTAGTTGGTGCGACCATCGTTGCAGTTTTCCCA
TTGGTATGGATTATCATATC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MVKERNLTRWIFVLPAMIIVGLLFVYPFFSSIFYSFTNKHLIMPNYKFVGLANYKAVLSDPNFFNAFFNSIKWTIFSLVG
QVLVGFVLALALHRVRHFKKLYRTLLIVPWAFPTIVIAFSWQWILNGVYGYLPNLIVKLGLMEHTPAFLTDSTWAFLCLV
FINIWFGAPMIMVNVLSALQTVPEEQFEAAKIDGASSWQVFKFIVFPHIKVVVGLLVVLRTVWIFNNFDIIYLITGGGPA
NATTTLPIFAYNLGWGTKLLGRASAVTVLLFIFLVAICFIYFAIISKWEKEGRK

Sequences:

>Translated_294_residues
MVKERNLTRWIFVLPAMIIVGLLFVYPFFSSIFYSFTNKHLIMPNYKFVGLANYKAVLSDPNFFNAFFNSIKWTIFSLVG
QVLVGFVLALALHRVRHFKKLYRTLLIVPWAFPTIVIAFSWQWILNGVYGYLPNLIVKLGLMEHTPAFLTDSTWAFLCLV
FINIWFGAPMIMVNVLSALQTVPEEQFEAAKIDGASSWQVFKFIVFPHIKVVVGLLVVLRTVWIFNNFDIIYLITGGGPA
NATTTLPIFAYNLGWGTKLLGRASAVTVLLFIFLVAICFIYFAIISKWEKEGRK
>Mature_294_residues
MVKERNLTRWIFVLPAMIIVGLLFVYPFFSSIFYSFTNKHLIMPNYKFVGLANYKAVLSDPNFFNAFFNSIKWTIFSLVG
QVLVGFVLALALHRVRHFKKLYRTLLIVPWAFPTIVIAFSWQWILNGVYGYLPNLIVKLGLMEHTPAFLTDSTWAFLCLV
FINIWFGAPMIMVNVLSALQTVPEEQFEAAKIDGASSWQVFKFIVFPHIKVVVGLLVVLRTVWIFNNFDIIYLITGGGPA
NATTTLPIFAYNLGWGTKLLGRASAVTVLLFIFLVAICFIYFAIISKWEKEGRK

Specific function: Probably part of the binding-protein-dependent transport system yurMNO. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=258, Percent_Identity=31.7829457364341, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789861, Length=274, Percent_Identity=29.5620437956204, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790465, Length=260, Percent_Identity=29.2307692307692, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33591; Mature: 33591

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKERNLTRWIFVLPAMIIVGLLFVYPFFSSIFYSFTNKHLIMPNYKFVGLANYKAVLSD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCHHHHCC
PNFFNAFFNSIKWTIFSLVGQVLVGFVLALALHRVRHFKKLYRTLLIVPWAFPTIVIAFS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQWILNGVYGYLPNLIVKLGLMEHTPAFLTDSTWAFLCLVFINIWFGAPMIMVNVLSALQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
TVPEEQFEAAKIDGASSWQVFKFIVFPHIKVVVGLLVVLRTVWIFNNFDIIYLITGGGPA
HCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
NATTTLPIFAYNLGWGTKLLGRASAVTVLLFIFLVAICFIYFAIISKWEKEGRK
CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVKERNLTRWIFVLPAMIIVGLLFVYPFFSSIFYSFTNKHLIMPNYKFVGLANYKAVLSD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCHHHHCC
PNFFNAFFNSIKWTIFSLVGQVLVGFVLALALHRVRHFKKLYRTLLIVPWAFPTIVIAFS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQWILNGVYGYLPNLIVKLGLMEHTPAFLTDSTWAFLCLVFINIWFGAPMIMVNVLSALQ
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
TVPEEQFEAAKIDGASSWQVFKFIVFPHIKVVVGLLVVLRTVWIFNNFDIIYLITGGGPA
HCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
NATTTLPIFAYNLGWGTKLLGRASAVTVLLFIFLVAICFIYFAIISKWEKEGRK
CCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]