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The map label for this gene is licR [H]

Identifier: 116516527

GI number: 116516527

Start: 276844

End: 278817

Strand: Direct

Name: licR [H]

Synonym: SPD_0280

Alternate gene names: 116516527

Gene position: 276844-278817 (Clockwise)

Preceding gene: 116517077

Following gene: 116515730

Centisome position: 13.53

GC content: 31.41

Gene sequence:

>1974_bases
GTGTTAAACATTAAAGAGAAAGATATCCTTCAATTTTTAATAAAAAATAAGGAACGTTTTGTTACAAGCAAAGAACTGGC
AGAATATTTATCCTGTTCAGATAGAACTGTCCGTAATGTACTGAAATTAATTGAGAAGACAATGATTATTCAAGGAGTCC
GGTTGATTTCAAAACAAGGTCAAGGGTATCAAATATTTTTTGAGAATCAAGGCGCTTATCAAGAGTTTAGACAAACTTAT
GAACTGGCAGAAGACTATACGAAAACTGCGGTTTCAAAAGGTGATGATCGTTTAGTATTTATCTTAAATAAATTATTATT
TGAGCAAGTTCCAGTTCTTTTTGATGATTTAGCTGATGAACTTTACGTTAGTCGTTCAACATTATCTCATGATTTCAAAA
AGATACGAGTGATGTTATCAGAGTATAATTTGTCCATTGAGAGTAGGGCGAATAAAGGAGTTTATGTCTCAGGCGAGGAA
CGTGATAAACGACGTTTTATCATAAATTATTTCCTAGAGAATCAATTTTTTAAAACAATACATTGCTATGTAAAATTTAA
CTTTTTTGATCAAACTGTTCCATTAGAAGAATTTGCTAGAATTGTTTTGGATGAATGCCAAGAGGCCAACCTAAAACTAT
CTGATTTTGTACTACAGAATTTAGTAGTTCACATAGCATTGTCTGTGATTCGTTTAAAATCCGGATTTGAAATAAAAAAT
ATAGACTGTCAGATGACTGATGATGCAATAGAGAGAAAGGTTGCCCAAAGAATTCTTTCTAAAGTAAGAGAAGTAACAAA
TCAGGAATTTCCAGTTCAGGAAATAGACTACATTACTTTGCATTTGTTAGCTAAGAGTCAACAATGTCAAAAAAATCAGA
AGAATATTTCTGAAGAAGTTTTAAAAAAATCTTTACTTAAAACATTTCAGAATTTAGGATTAGATGATATGTATAACTTT
TCTTCAGATTTCCAACTAATTGAAGGATTGATAACTCATCTAATGACACTACAAGTACGTTTAGAAAGCCGGATTACCTT
AAATAACCCTTTGGTAGATGAAATTAAACAGAATTATAGTGATATATTCTTTATGACTAGAGAAATTCTTGCAAATATGG
ACAAGTTCTTGGAGTGGTCAATATCAGATGATGAAATAGCATATGTAAGTCTTCACTTTTTAGCTGCTATGGAACGTAGC
AAAGAGAGTACTAAGTTTAATATTCTTGCTATTTGTGCAACGGGATTTGGTGCAGCCCAAATGTTAAGAAATCGTTTGGA
AACGGAGTTTGGGAACCGAGTAGAAGTTGTTGATGTAATAGGCTATTATGAATTGAATCAAGAAAAACTTAAAGGAATAG
ATTTTATAGTGTCGGCTGTTGATTTATCAAATCTATATTTTCAAATTCCAGTTTTTAAAGTTAGTGTATTTCTTAAGAGT
GATGAGATGGAAATGATTCGCAAAGCTATGGATCAGATGCAAGTTTCAAGTCATATACAATCGTCAAAGATTAGCAAGTT
TGAAAACAACAACTTTAGACAGTATTTTAGTAAAGAAAATTTTTTAATATGTACTAAATATGACAAGGAAAATTTACTTG
AAAAGATGGTTGAGGGTTTATCTGTTGGTGAATCAAATGAGTTTGAACAATCTTTACTTTATGGAATTAAACAGCGAGAA
GAATTAAGTTCAGTTGTTTTTTCTGAAAAAATTGCAGTTCCGCATCCTATTCAACCCTTTGGTACAGAGGGAAAGGTTTC
GATTGCAATTTGTAAAGATTCGTTACTCTGGGATAATCAAAGTTCACATGTCCAGCTAGTATTTCTTCTATCTCCATCAA
TATATGGGAACGAAGGTTTGGCAACTGTGACTAAAAAGATAGTCTCTCTGACAGAGAATGATGAATTGCAAAATCAGCTA
ATATCTTGCAATAACTTTGAAGATTTTATTAACATATTTGAGAAGATAAAATAG

Upstream 100 bases:

>100_bases
TATTTAGGTTAAGATAAATTGTTTTGAGTTTGATATAAACTGATTTAAGTGTATAATATGCTTCAATATATGAAAACATA
CGTTTTAGGAGGGAATGAAT

Downstream 100 bases:

>100_bases
GAGGTTCATATGAATCAAGAGGAACTGCAGGTTGCAGCATTTGAAATTATCCTGCATTCGGGAAATGCAAGGTCAGAAAT
ACATGAAGCATTTGCAAAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]

Number of amino acids: Translated: 657; Mature: 657

Protein sequence:

>657_residues
MLNIKEKDILQFLIKNKERFVTSKELAEYLSCSDRTVRNVLKLIEKTMIIQGVRLISKQGQGYQIFFENQGAYQEFRQTY
ELAEDYTKTAVSKGDDRLVFILNKLLFEQVPVLFDDLADELYVSRSTLSHDFKKIRVMLSEYNLSIESRANKGVYVSGEE
RDKRRFIINYFLENQFFKTIHCYVKFNFFDQTVPLEEFARIVLDECQEANLKLSDFVLQNLVVHIALSVIRLKSGFEIKN
IDCQMTDDAIERKVAQRILSKVREVTNQEFPVQEIDYITLHLLAKSQQCQKNQKNISEEVLKKSLLKTFQNLGLDDMYNF
SSDFQLIEGLITHLMTLQVRLESRITLNNPLVDEIKQNYSDIFFMTREILANMDKFLEWSISDDEIAYVSLHFLAAMERS
KESTKFNILAICATGFGAAQMLRNRLETEFGNRVEVVDVIGYYELNQEKLKGIDFIVSAVDLSNLYFQIPVFKVSVFLKS
DEMEMIRKAMDQMQVSSHIQSSKISKFENNNFRQYFSKENFLICTKYDKENLLEKMVEGLSVGESNEFEQSLLYGIKQRE
ELSSVVFSEKIAVPHPIQPFGTEGKVSIAICKDSLLWDNQSSHVQLVFLLSPSIYGNEGLATVTKKIVSLTENDELQNQL
ISCNNFEDFINIFEKIK

Sequences:

>Translated_657_residues
MLNIKEKDILQFLIKNKERFVTSKELAEYLSCSDRTVRNVLKLIEKTMIIQGVRLISKQGQGYQIFFENQGAYQEFRQTY
ELAEDYTKTAVSKGDDRLVFILNKLLFEQVPVLFDDLADELYVSRSTLSHDFKKIRVMLSEYNLSIESRANKGVYVSGEE
RDKRRFIINYFLENQFFKTIHCYVKFNFFDQTVPLEEFARIVLDECQEANLKLSDFVLQNLVVHIALSVIRLKSGFEIKN
IDCQMTDDAIERKVAQRILSKVREVTNQEFPVQEIDYITLHLLAKSQQCQKNQKNISEEVLKKSLLKTFQNLGLDDMYNF
SSDFQLIEGLITHLMTLQVRLESRITLNNPLVDEIKQNYSDIFFMTREILANMDKFLEWSISDDEIAYVSLHFLAAMERS
KESTKFNILAICATGFGAAQMLRNRLETEFGNRVEVVDVIGYYELNQEKLKGIDFIVSAVDLSNLYFQIPVFKVSVFLKS
DEMEMIRKAMDQMQVSSHIQSSKISKFENNNFRQYFSKENFLICTKYDKENLLEKMVEGLSVGESNEFEQSLLYGIKQRE
ELSSVVFSEKIAVPHPIQPFGTEGKVSIAICKDSLLWDNQSSHVQLVFLLSPSIYGNEGLATVTKKIVSLTENDELQNQL
ISCNNFEDFINIFEKIK
>Mature_657_residues
MLNIKEKDILQFLIKNKERFVTSKELAEYLSCSDRTVRNVLKLIEKTMIIQGVRLISKQGQGYQIFFENQGAYQEFRQTY
ELAEDYTKTAVSKGDDRLVFILNKLLFEQVPVLFDDLADELYVSRSTLSHDFKKIRVMLSEYNLSIESRANKGVYVSGEE
RDKRRFIINYFLENQFFKTIHCYVKFNFFDQTVPLEEFARIVLDECQEANLKLSDFVLQNLVVHIALSVIRLKSGFEIKN
IDCQMTDDAIERKVAQRILSKVREVTNQEFPVQEIDYITLHLLAKSQQCQKNQKNISEEVLKKSLLKTFQNLGLDDMYNF
SSDFQLIEGLITHLMTLQVRLESRITLNNPLVDEIKQNYSDIFFMTREILANMDKFLEWSISDDEIAYVSLHFLAAMERS
KESTKFNILAICATGFGAAQMLRNRLETEFGNRVEVVDVIGYYELNQEKLKGIDFIVSAVDLSNLYFQIPVFKVSVFLKS
DEMEMIRKAMDQMQVSSHIQSSKISKFENNNFRQYFSKENFLICTKYDKENLLEKMVEGLSVGESNEFEQSLLYGIKQRE
ELSSVVFSEKIAVPHPIQPFGTEGKVSIAICKDSLLWDNQSSHVQLVFLLSPSIYGNEGLATVTKKIVSLTENDELQNQL
ISCNNFEDFINIFEKIK

Specific function: Positive regulator of the licABCH operon [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR007737
- InterPro:   IPR011608
- InterPro:   IPR016152
- InterPro:   IPR002178
- InterPro:   IPR013011
- InterPro:   IPR003501
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 76299; Mature: 76299

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS51094 PTS_EIIA_TYPE_2 ; PS51099 PTS_EIIB_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIKEKDILQFLIKNKERFVTSKELAEYLSCSDRTVRNVLKLIEKTMIIQGVRLISKQG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
QGYQIFFENQGAYQEFRQTYELAEDYTKTAVSKGDDRLVFILNKLLFEQVPVLFDDLADE
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LYVSRSTLSHDFKKIRVMLSEYNLSIESRANKGVYVSGEERDKRRFIINYFLENQFFKTI
HHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHEEE
HCYVKFNFFDQTVPLEEFARIVLDECQEANLKLSDFVLQNLVVHIALSVIRLKSGFEIKN
EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEC
IDCQMTDDAIERKVAQRILSKVREVTNQEFPVQEIDYITLHLLAKSQQCQKNQKNISEEV
CCCEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKSLLKTFQNLGLDDMYNFSSDFQLIEGLITHLMTLQVRLESRITLNNPLVDEIKQNYS
HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHH
DIFFMTREILANMDKFLEWSISDDEIAYVSLHFLAAMERSKESTKFNILAICATGFGAAQ
HHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHH
MLRNRLETEFGNRVEVVDVIGYYELNQEKLKGIDFIVSAVDLSNLYFQIPVFKVSVFLKS
HHHHHHHHHCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEC
DEMEMIRKAMDQMQVSSHIQSSKISKFENNNFRQYFSKENFLICTKYDKENLLEKMVEGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHHC
SVGESNEFEQSLLYGIKQREELSSVVFSEKIAVPHPIQPFGTEGKVSIAICKDSLLWDNQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEECCC
SSHVQLVFLLSPSIYGNEGLATVTKKIVSLTENDELQNQLISCNNFEDFINIFEKIK
CCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MLNIKEKDILQFLIKNKERFVTSKELAEYLSCSDRTVRNVLKLIEKTMIIQGVRLISKQG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
QGYQIFFENQGAYQEFRQTYELAEDYTKTAVSKGDDRLVFILNKLLFEQVPVLFDDLADE
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LYVSRSTLSHDFKKIRVMLSEYNLSIESRANKGVYVSGEERDKRRFIINYFLENQFFKTI
HHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHEEE
HCYVKFNFFDQTVPLEEFARIVLDECQEANLKLSDFVLQNLVVHIALSVIRLKSGFEIKN
EEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEC
IDCQMTDDAIERKVAQRILSKVREVTNQEFPVQEIDYITLHLLAKSQQCQKNQKNISEEV
CCCEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKKSLLKTFQNLGLDDMYNFSSDFQLIEGLITHLMTLQVRLESRITLNNPLVDEIKQNYS
HHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHH
DIFFMTREILANMDKFLEWSISDDEIAYVSLHFLAAMERSKESTKFNILAICATGFGAAQ
HHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHH
MLRNRLETEFGNRVEVVDVIGYYELNQEKLKGIDFIVSAVDLSNLYFQIPVFKVSVFLKS
HHHHHHHHHCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEC
DEMEMIRKAMDQMQVSSHIQSSKISKFENNNFRQYFSKENFLICTKYDKENLLEKMVEGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHHC
SVGESNEFEQSLLYGIKQREELSSVVFSEKIAVPHPIQPFGTEGKVSIAICKDSLLWDNQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEECCC
SSHVQLVFLLSPSIYGNEGLATVTKKIVSLTENDELQNQLISCNNFEDFINIFEKIK
CCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8990303; 8969509; 9384377; 10438772 [H]