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The map label for this gene is yhdW [H]

Identifier: 116516500

GI number: 116516500

Start: 892131

End: 893894

Strand: Direct

Name: yhdW [H]

Synonym: SPD_0880

Alternate gene names: 116516500

Gene position: 892131-893894 (Clockwise)

Preceding gene: 116515938

Following gene: 116515422

Centisome position: 43.6

GC content: 36.11

Gene sequence:

>1764_bases
ATGAAACCTGAAAAACCTAAAAAATTGGGTCTTAAACAGATTTACCTCAATCTTGATAAAATCCTCTTTCTATTTTTCTT
GATTTTTATGATAGTGGAGTATTTGTGGGTACCATTCAATTCATGGTTGGCTAGCTTCTTATTAGATCAGACAGGTTATC
TTTTTATTTCCTATAACAATGTCTTAGCCATCCTTACTCATTCTCCATTGATTAGTCTAGCTTTTTTAGCCTTGATTGTA
ATTAACCTTCTGGTTGCTTATTTTCAAATAGGACTCCTCTTTATTGGTGCTCGTCATCTCCTCTATAATGAAAAGCGAAG
GCTAATTGAGTATATCCGCAAGGTTTTCCATGAAAGTTTTGGATTTATGAAAAAGCTAACTTGCGCTAAAGCCTTGTTTA
TCTTTTTCTATATAGCTATGCTGTTTCCTTTTATACGGAAAATGCTGAAGATTTATTATCTTAATAAAATCGTCATTCCA
GAGTTTATCCAAGCTTATTTAGAAGATAGATATTGGATGTGGTGGCTGAGCATCCTACTTCTATCTCTTATCTTTCTCTA
TGTCTCTGTCAGATTGATGTTTGCCCTTCCGAAGATTGTATATGATCAGCTGACTGTTCGAGAAGCAGTGATGTTTAGCT
TGGAGAAAACCAAGAAGAGAGTTACTTTTTATGCTTGGAATTTATTTTACATCTTGCTCAAAGCACATTTATTATTTTAT
CTTCCTTTGATCCCTTTATTATTGGCTCAAACTTTGGTAGATGATATCACTCAGAGAGAGTCTCTGATTCTTGGTATTTT
GAATTTTGTCGTGATTAAAAATCTCTATTATATGGCTCTGACTTATTTTTTGGTTAAATTTGTTTCATTTTTGACAGGAA
AGGAGCTGGATATGCTTCCTAGGAGAGAAAAAGATCACATCGTGCGATGGGGTGTCATGACTTGTGCCAGTCTTTTCTTT
GCCTTAGAAGGTTATATTTATCTGGAGGCTCCCATGGTTCATCTACCTCAACTTATTTCTCACCGAGGGGTTTCCAATGC
AAATGGGATTCAAAATACAGTAGAGTCCTTGGAAACTACAGCACAACTCAAACCAGACTTGGTGGAGACGGACGTGCAGG
AAACAAAAGATGGGCAGTTTGTCATGATGCATGATGCTAACTTGAAAAATCTAGCAGGTATCAATAAAAGTCCTCAAGAC
TTAAACTTGGAGGAGCTTAAAGGGATTGATATTTTTGAAAATGGCTACCAGACTAAAATTTCAAGCTTTGAAGATTATCT
CAGTCGAGCCAACGAACTTGGTCAAAAATTACTAATTGAAATTAAAACCAGTAAAAAAGATAGTCCAGACATGATGAACC
GCTTTTTAGCCCGTTATGCTGCAAAGCTCAAGATTTATGGACATCAAATCCAGTCTTTAGACTACCATGTTGTCGAAAAA
GTAAGGCAGTATGATGCCGAACTGCCAGTTTATTTCATCATGCCCTACAATTCTGTCTTTCCTAAAACAAGAGCGACAGG
ATATACTATGGAGTACTCAACCTTGGATGAATATTTTGTAAGCAAACTATGGACAACGGATCAGAAACTTTATGTCTGGA
CTGTCAATGATTCAGAAGCTATCAGCAAATCTCTTCACTTAGGAGTAGATGGAGTGATTACAGATGATTTGGAAAAAGTT
CAGCGGGAAATAGAAGTAGCCCAAGAAGATCCAGAATATACGGATTTGCTCTTGAAAAAAGCATTGGAATTCTTTGAATT
TTAG

Upstream 100 bases:

>100_bases
AGTCGGATCAAGCTAGGGAATTGTTAGAGACAGAAAGTAGCTTATCAAACAATCCTTTTGGTGGCTTGGACTTGTCTCAA
TTATTTGACTAGGAGTGCCT

Downstream 100 bases:

>100_bases
TAATAAAAAAGAGGAACGGTTGTTCCTCCCATGATAGGTAAGTATTCTTGTGAATGCTTGCTTTTTTGTGGTTGCAATCC
GTTTACGAGAATTGTTTGTA

Product: hypothetical protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 587; Mature: 587

Protein sequence:

>587_residues
MKPEKPKKLGLKQIYLNLDKILFLFFLIFMIVEYLWVPFNSWLASFLLDQTGYLFISYNNVLAILTHSPLISLAFLALIV
INLLVAYFQIGLLFIGARHLLYNEKRRLIEYIRKVFHESFGFMKKLTCAKALFIFFYIAMLFPFIRKMLKIYYLNKIVIP
EFIQAYLEDRYWMWWLSILLLSLIFLYVSVRLMFALPKIVYDQLTVREAVMFSLEKTKKRVTFYAWNLFYILLKAHLLFY
LPLIPLLLAQTLVDDITQRESLILGILNFVVIKNLYYMALTYFLVKFVSFLTGKELDMLPRREKDHIVRWGVMTCASLFF
ALEGYIYLEAPMVHLPQLISHRGVSNANGIQNTVESLETTAQLKPDLVETDVQETKDGQFVMMHDANLKNLAGINKSPQD
LNLEELKGIDIFENGYQTKISSFEDYLSRANELGQKLLIEIKTSKKDSPDMMNRFLARYAAKLKIYGHQIQSLDYHVVEK
VRQYDAELPVYFIMPYNSVFPKTRATGYTMEYSTLDEYFVSKLWTTDQKLYVWTVNDSEAISKSLHLGVDGVITDDLEKV
QREIEVAQEDPEYTDLLLKKALEFFEF

Sequences:

>Translated_587_residues
MKPEKPKKLGLKQIYLNLDKILFLFFLIFMIVEYLWVPFNSWLASFLLDQTGYLFISYNNVLAILTHSPLISLAFLALIV
INLLVAYFQIGLLFIGARHLLYNEKRRLIEYIRKVFHESFGFMKKLTCAKALFIFFYIAMLFPFIRKMLKIYYLNKIVIP
EFIQAYLEDRYWMWWLSILLLSLIFLYVSVRLMFALPKIVYDQLTVREAVMFSLEKTKKRVTFYAWNLFYILLKAHLLFY
LPLIPLLLAQTLVDDITQRESLILGILNFVVIKNLYYMALTYFLVKFVSFLTGKELDMLPRREKDHIVRWGVMTCASLFF
ALEGYIYLEAPMVHLPQLISHRGVSNANGIQNTVESLETTAQLKPDLVETDVQETKDGQFVMMHDANLKNLAGINKSPQD
LNLEELKGIDIFENGYQTKISSFEDYLSRANELGQKLLIEIKTSKKDSPDMMNRFLARYAAKLKIYGHQIQSLDYHVVEK
VRQYDAELPVYFIMPYNSVFPKTRATGYTMEYSTLDEYFVSKLWTTDQKLYVWTVNDSEAISKSLHLGVDGVITDDLEKV
QREIEVAQEDPEYTDLLLKKALEFFEF
>Mature_587_residues
MKPEKPKKLGLKQIYLNLDKILFLFFLIFMIVEYLWVPFNSWLASFLLDQTGYLFISYNNVLAILTHSPLISLAFLALIV
INLLVAYFQIGLLFIGARHLLYNEKRRLIEYIRKVFHESFGFMKKLTCAKALFIFFYIAMLFPFIRKMLKIYYLNKIVIP
EFIQAYLEDRYWMWWLSILLLSLIFLYVSVRLMFALPKIVYDQLTVREAVMFSLEKTKKRVTFYAWNLFYILLKAHLLFY
LPLIPLLLAQTLVDDITQRESLILGILNFVVIKNLYYMALTYFLVKFVSFLTGKELDMLPRREKDHIVRWGVMTCASLFF
ALEGYIYLEAPMVHLPQLISHRGVSNANGIQNTVESLETTAQLKPDLVETDVQETKDGQFVMMHDANLKNLAGINKSPQD
LNLEELKGIDIFENGYQTKISSFEDYLSRANELGQKLLIEIKTSKKDSPDMMNRFLARYAAKLKIYGHQIQSLDYHVVEK
VRQYDAELPVYFIMPYNSVFPKTRATGYTMEYSTLDEYFVSKLWTTDQKLYVWTVNDSEAISKSLHLGVDGVITDDLEKV
QREIEVAQEDPEYTDLLLKKALEFFEF

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG4781

COG function: function code C; Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 68894; Mature: 68894

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]